R devel - May 2017 - [R] Somewhat obscure bug in R 3.4.0 building from source

On 21/05/2017 10:30 AM, Peter Carbonetto wrote:
> Hi,
>
> I uncovered a bug in installing R 3.4.0 from source in Linux, following the
> standard procedure (configure; make; make install). Is this an appropriate
> place to report this bug? If not, can you please direct me to the
> appropriate place?
Generally R-devel is better; I've responded there.
>
> The error occurs only when I do "make clean" followed by
"make" again; make
> works the first time.
>
> The error is a failure to build NEWS.pdf:
>
> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
>   pdflatex is not available
> Calls: <Anonymous> -> texi2pdf -> texi2dvi
> Execution halted
> make[1]: *** [NEWS.pdf] Error 1
> make: [docs] Error 2 (ignored)
>
> and can be reproduced wit the following sequence:
>
> ./configure
> make
> make clean
> make
We usually don't build in the source directory; see the second 
recommendation in the admin manual section 2.1.  So it's possible 
there's a bug triggered when you do that.  Can you try building in a 
separate directory?

Duncan Murdoch
>
> This suggests to me that perhaps "make clean" is not working.
>
> I'm happy to provide more details so that you are able to reproduce the
bug.
>
> Thanks,
>
> Peter Carbonetto, Ph.D.
> Computational Staff Scientist, Statistics & Genetics
> Research Computing Center
> University of Chicago
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

Inline below...
> On 21 May 2017, at 20:57 , Duncan Murdoch <murdoch.duncan at
gmail.com> wrote:
> 
> On 21/05/2017 10:30 AM, Peter Carbonetto wrote:
>> Hi,
>> 
>> I uncovered a bug in installing R 3.4.0 from source in Linux, following
the
>> standard procedure (configure; make; make install). Is this an
appropriate
>> place to report this bug? If not, can you please direct me to the
>> appropriate place?
> 
> Generally R-devel is better; I've responded there.
> 
>> 
>> The error occurs only when I do "make clean" followed by
"make" again; make
>> works the first time.
>> 
>> The error is a failure to build NEWS.pdf:
>> 
>> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet =
quiet,  :
>>  pdflatex is not available
>> Calls: <Anonymous> -> texi2pdf -> texi2dvi
>> Execution halted
>> make[1]: *** [NEWS.pdf] Error 1
>> make: [docs] Error 2 (ignored)
>> 
>> and can be reproduced wit the following sequence:
>> 
>> ./configure
>> make
>> make clean
>> make
> 
> We usually don't build in the source directory; see the second
recommendation in the admin manual section 2.1.  So it's possible
there's a bug triggered when you do that.  Can you try building in a
separate directory?
Notice that the error is that "pdflatex" is missing from your setup.
We do, for the benefit of users with defective TeX installations supply a
pre-built NEWS.pdf (and NEWS.html too) in the source tarballs. However, they are
technically make targets and make clean will wipe them; in that case, you had
better have the tools to rebuild them!

-pd
> 
> Duncan Murdoch
> 
>> 
>> This suggests to me that perhaps "make clean" is not working.
>> 
>> I'm happy to provide more details so that you are able to reproduce
the bug.
>> 
>> Thanks,
>> 
>> Peter Carbonetto, Ph.D.
>> Computational Staff Scientist, Statistics & Genetics
>> Research Computing Center
>> University of Chicago
>> 
>> 	[[alternative HTML version deleted]]
>> 
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>> 
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

Hi Peter, Duncan & Bert,

Thank you kindly for the responses.

Indeed, doc/NEWS.pdf is included in the source distribution, and then
removed upon "make clean".

I thought that it might be useful to report this for your benefit, but on
closer inspection it appears that I'm getting errors that arise due to
incompatibilities in my texlive and texinfo installations. This is the
error I get when trying to build NEWS.pdf using "R CMD Rd2pdf":

R CMD Rd2pdf --output=NEWS.pdf NEWS.Rd
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  :
  Running 'texi2dvi' on 'Rd2.tex' failed.
Messages:
/software/texinfo-6.3-el7-x86_64/bin/texi2dvi: TeX neither supports
-recorder nor outputs \openout lines in its log file
Output:

I'm not sure what to make of this error exactly but perhaps it is
introduced by the latest version of texinfo (which seems to be a recurring
issue based on reading the help for texi2dvi in R):

texi2dvi --version
texi2dvi (GNU Texinfo 6.3) 7353

Peter

On Sun, May 21, 2017 at 5:07 PM, Peter Dalgaard <pdalgd at gmail.com>
wrote:
> Inline below...
>
> > On 21 May 2017, at 20:57 , Duncan Murdoch <murdoch.duncan at
gmail.com>
> wrote:
> >
> > On 21/05/2017 10:30 AM, Peter Carbonetto wrote:
> >> Hi,
> >>
> >> I uncovered a bug in installing R 3.4.0 from source in Linux,
following
> the
> >> standard procedure (configure; make; make install). Is this an
> appropriate
> >> place to report this bug? If not, can you please direct me to the
> >> appropriate place?
> >
> > Generally R-devel is better; I've responded there.
> >
> >>
> >> The error occurs only when I do "make clean" followed by
"make" again;
> make
> >> works the first time.
> >>
> >> The error is a failure to build NEWS.pdf:
> >>
> >> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet
> quiet,  :
> >>  pdflatex is not available
> >> Calls: <Anonymous> -> texi2pdf -> texi2dvi
> >> Execution halted
> >> make[1]: *** [NEWS.pdf] Error 1
> >> make: [docs] Error 2 (ignored)
> >>
> >> and can be reproduced wit the following sequence:
> >>
> >> ./configure
> >> make
> >> make clean
> >> make
> >
> > We usually don't build in the source directory; see the second
> recommendation in the admin manual section 2.1.  So it's possible
there's a
> bug triggered when you do that.  Can you try building in a separate
> directory?
>
> Notice that the error is that "pdflatex" is missing from your
setup. We
> do, for the benefit of users with defective TeX installations supply a
> pre-built NEWS.pdf (and NEWS.html too) in the source tarballs. However,
> they are technically make targets and make clean will wipe them; in that
> case, you had better have the tools to rebuild them!
>
> -pd
>
> >
> > Duncan Murdoch
> >
> >>
> >> This suggests to me that perhaps "make clean" is not
working.
> >>
> >> I'm happy to provide more details so that you are able to
reproduce the
> bug.
> >>
> >> Thanks,
> >>
> >> Peter Carbonetto, Ph.D.
> >> Computational Staff Scientist, Statistics & Genetics
> >> Research Computing Center
> >> University of Chicago
> >>
> >>      [[alternative HTML version deleted]]
> >>
> >> ______________________________________________
> >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more,
see
> >> https://stat.ethz.ch/mailman/listinfo/r-help
> >> PLEASE do read the posting guide http://www.R-project.org/
> posting-guide.html
> >> and provide commented, minimal, self-contained, reproducible code.
> >>
> >
> > ______________________________________________
> > R-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-devel
>
> --
> Peter Dalgaard, Professor,
> Center for Statistics, Copenhagen Business School
> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> Phone: (+45)38153501
> Office: A 4.23
> Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com
>
>
>
>
>
>
>
>
>
>
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