similar to: print.citation, small bug?

Hi, consider the following > a<-gl(3,3,9) > a [1] 1 1 1 2 2 2 3 3 3 Levels: 1 2 3 > levels(a)<-3:1 > a [1] 3 3 3 2 2 2 1 1 1 Levels: 3 2 1 > a<-gl(3,3,9) > factor(a,levels=3:1) [1] 1 1 1 2 2 2 3 3 3 Levels: 3 2 1 It is probably something obvious I missed, but reading the documentation of factor, and levels I would have thought that both should produce the same output as

Hi, I am having trouble with the survival library, particualrily the coxph function. the following works coxph(jtree9$cph.call,z,rep(1,dim(z)[1])) Call: coxph(formula = jtree9$cph.call, data = z, weights = rep(1, dim(z)[1])) coef exp(coef) se(coef) z p SM 0.2574 1.294 0.0786 3.274 1.1e-03 Sex -0.1283 0.880 0.1809 -0.709

Hi, The following function does work optimize.W<-function(W,k,G,Groups,cph.call,z){ n<-length(Groups) grp.wt<-rep(0,n) for(i in 1:(length(G))){ ind<-Groups == G[i] if(G[i]!=k){ grp.wt[ind]<-W[i] } elsegrp.wt[ind]<-1 } z<-data.frame(cbind(z,grp.wt=grp.wt)) #needed to make the case weights #part of the data

Dear Colleagues, I would like to provide a CITATION file for my package nat.nblast [1]. I have the correct citation in BibTeX format [2]. How can I convert this BibTeX to the format needed by R for a package CITATION file (I have a lot of other packages needing citations ...). I think what I need is the opposite of RefManageR::toBiblatex [3]. This seems like it should be a common need, so I

I have two versions of a bibtex database which have gotten badly out of sync. I need to find find all the entries in bib2 which are not contained in bib1, according to their bibtex keys. But I can't figure out how to extract a list of the bibentry keys in these databases. A minor question: Is there someway to prevent read.bib from ignoring entries that do not contain all required fields?

I downloaded the latest version of R (1.5.0) and issued a read.table() command that used to work with (1.3.1). Unfortunately I erased 1.3.1 from my hard drive after I downloaded R 1.5.0. Here's the command and the error message I get under 1.5.0: > golub1<-read.table("C:/Microarrays/code/data_set_ALL_AML_train.txt",sep="\t",q

Hi the following example I think demonstrates the inconsistency > f<-function(x) x > length(f) [1] 1 > is.na(f) [1] FALSE Warning message: In is.na(f) : is.na() applied to non-(list or vector) of type 'closure' The documentation states: Arguments x an R object to be tested. value a suitable index vector for use with x. And nowhere in the details was it implied (to me

On Thu, 30 May 2019, Dr Gregory Jefferis wrote: > Dear Colleagues, > > I would like to provide a CITATION file for my package nat.nblast [1]. > > I have the correct citation in BibTeX format [2]. How can I convert this > BibTeX to the format needed by R for a package CITATION file (I have a > lot of other packages needing citations ...). (1) You can use read.bib() from the

The following citEntry includes a url with %3A and other encodings citEntry(entry="article", title = "Software for Computing and Annotating Genomic Ranges", author = personList( as.person("Michael Lawrence" )), year = 2013, journal = "{PLoS} Computational Biology", volume = "9", issue =

Hi, Is there a command that will give the total size of an R object in bytes? thanks Nicholas -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at

Folks I'm having problems installing Mariadb in Centos 7. Here's what I did: 0) Become root 1) Make sure that mariadb and mysql are NOT installed. 2) Delete residual libs rm -rf /var/lib/mysq* 3) yum install -y mariadb-server installed mariadb-5.5.50-1.el7_2.x86_64 from the Centos 'updates' repository 4) systemctl start mariadb 5) systemctl status mariadb

Hi, Am I hitting some limit in match? Consider the following example: > tst<-seq(100,125,by=.2)%in%seq(0,800,by=.1) > sum(tst) [1] 76 > seq(100,125,by=.2) [1] 100.0 100.2 100.4 100.6 100.8 101.0 101.2 101.4 101.6 101.8 102.0 102.2 [13] 102.4 102.6 102.8 103.0 103.2 103.4 103.6 103.8 104.0 104.2 104.4 104.6 [25] 104.8 105.0 105.2 105.4 105.6 105.8 106.0 106.2 106.4 106.6 106.8

Hi, Am I hitting some limit in match? Consider the following example: > tst<-seq(100,125,by=.2)%in%seq(0,800,by=.1) > sum(tst) [1] 76 > seq(100,125,by=.2) [1] 100.0 100.2 100.4 100.6 100.8 101.0 101.2 101.4 101.6 101.8 102.0 102.2 [13] 102.4 102.6 102.8 103.0 103.2 103.4 103.6 103.8 104.0 104.2 104.4 104.6 [25] 104.8 105.0 105.2 105.4 105.6 105.8 106.0 106.2 106.4 106.6 106.8

Hi, I am writing some basic smoothers in R for cleaning some spectral data. I wanted to see if I could get close to matlab for speed, so I was trying to compare SparseM with Matrix to see which could do the choleski decomposition the fastest. Here is the function using SparseM difsm <- function(y, lambda, d){ # Smoothing with a finite difference penalty # y: signal to be smoothed #

Hi, I have large data frame with many columns. A short example is given below: > dataH host ms01 ms31 ms33 ms34 1 cattle 4 20 9 6 2 sheep 4 3 4 5 3 cattle 4 3 4 5 4 cattle 4 3 4 5 5 sheep 4 3 5 5 6 goat 4 3 4 5 7 sheep 4 3 5 5 8 goat 4 3 4 5 9 goat 4 3 4 5 10 cattle

At 09:36 AM 9/23/2016, you wrote: >On 2016-09-22 18:07, david wrote: > > Folks > > > > I'm having problems installing Mariadb in Centos 7. > > > > > > Here's what I did: > > > > 0) Become root > > 1) Make sure that mariadb and mysql are NOT installed. > > 2) Delete residual libs > > rm -rf /var/lib/mysq* >

Greetings R Help Group, How does one effect a multiphasic logistic growth model with 4 phases (e.g. Koops 1986; Weigel, Craig, Bidwell and Bates 1992; Grossman and Koops 2003) with R. Before writing to the group, the R help archives were searched, the web was searched with Google, Venables and Ripley 2002 was consulted, Pinheiro and Bates 2000 was consulted, Bates and Watts 2007 was bought and

Full_Name: charles blundell Version: 2.7.0 OS: Debian GNU/Linux Submission from: (NULL) (217.37.73.202) The Debian Policy Manual says concerning lines in a Description field: * Those containing a space, a full stop and some more characters. These are for future expansion. Do not use them. (section 5.6.13, http://www.debian.org/doc/debian-policy/ch-controlfields.html) But for example: >

Well Dr. Ripley helped me solve the first problem, next question I need to do some debugging now that the function loads properly into R. I checked the S documentation and to use the C I/O functions you need to include newredef.h, this file doesn't exist in /src/include. How does this work in R? under S3.4 on a dec station i could use fprintf(stdout,..); fflush(stdout); thanks, Nicholas PS

Hi, I had some excel files that I needed to read into R, there were alot so I didn't want to do them by hand in gnumeric. I tried all the recommendations in the data import/export manuals, including RODBC, and for some reason they all failed on these files. Then I stumbled on ssconvert, a script that wraps all gnumerics converters, see