Displaying 20 results from an estimated 7000 matches similar to: "What is "R NEWS format"?"
2008 Oct 20
3
The evaluation of optional function arguments
Dear R-helpers,
I've got two functions; callTimes() calls times(), passing it an
optional argument (bar) by name (bar=harry). times() then believes it
has been passed a name, rather than a value ? but I want the value,
not the name.
Worse, if I evaluate the name, it is evaluated in the environment
times() was defined, not where it is called.
How can I call times(), defining its optional
2011 Feb 19
1
Accessing Package NEWS (NEWS.Rd)
Okay. So, after having spent quite some time never really tracking down
why my package NEWS files were unacceptable to readNEWS(), I
noticed that there was recent (to me anyway) development that allowed
the NEWS to be done as an Rd file. Sweet! A more standard format...
I converted a NEWS file in one of my unreleased packages to Rd format.
checkNEWS() gave it a thumbs up.
But then it went south.
2017 May 18
0
Bug: floating point bug in nclass.FD can cause hist() to crash
I just got the same error message with
> sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.4
Matrix products: default
BLAS:
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
2017 May 18
2
Bug: floating point bug in nclass.FD can cause hist() to crash
Hello everybody,
This is a bug involving functions in core R package:
graphics::hist.default, grDevices::nclass.FD, and
base::pretty.default. It is not yet on Bugzilla. I cannot submit it
myself, as I do not have an account. Could somebody else add it for
me, perhaps? That would be much appreciated.
Kind regards,
Sietse
Sietse Brouwer
Summary
-------
Floating point errors can cause a data
2019 Jun 28
0
R-Forge > GitHub?
Henrik's advice is all good. I would say his idea of the final commit
of a README pointer is better than deleting things at R-forge; there is
likely old information out there somewhere pointing to R-forge as a
location for Ecdat development, and any bug reports or discussion on
R-forge will not have been copied over to Github.
Duncan Murdoch
On 28/06/2019 4:14 a.m., Henrik Singmann
2019 Jun 28
1
R-Forge > GitHub?
Re your point 3: Because you have managed to create a GitHub version of
your repository that is not a fork of https://github.com/rforge/ecdat, but
its own independent repository, contacting GitHub support might not be the
right way forward. Note that https://github.com/rforge is simply a
read-only mirror of the complete R-Forge repository (and at least to me it
is unclear of whether GitHub itself
2002 Jan 17
2
Problem building packages from source (WIN32)
Dear List,
I have been experimenting with building packages from sources, having
previously relied upon the binaries.
I downloaded and installed all the tools suggested in
http://www.stats.ox.ac.uk/pub/Rtools/ , including ActivePerl 5.6.1.631.
I also downloaded the HTML Help workshop exe and installed it. During
install though, a message popped up to say that I had a newer version of
the
2014 Sep 13
1
vegan moved to GitHub and vegan 2.2-0 is coming (are you ready?)
Dear vegan team,
Vegan development happens now completely in github. R-Forge repository is no more in sync with github. I tried to commit all github changes to R-Forge, but a week ago I got a conflict in file and I haven't had time to resolve that conflict. You can follow vegan development and vegan discussion also without signing to github. The system seems to be completely open and does not
2013 Apr 11
1
Cannot find ldfortran (R on Cygwin)
Hi
I am new to Cygwin and Linux.
I installed R under Cygwin as part of the setup
I chose "All" during installation, for all packages. So I have the FULL
installlation of cygwin up and running, including gfortran.
*Under Cygwin, how do I check and configure the path to the various
libraries?*
I am trying below command and it says, cannot find "lgfortran"
But I have installed
2006 Oct 18
1
lmer- why do AIC, BIC, loglik change?
Hi all,
I am having issues comparing models with lmer. As an example, when
I run the code below the model summaries (AIC, BIC, loglik) differ between
the summary() and anova() commands. Can anyone clear up what's wrong?
Thank you!
Darren Ward
library(lme4)
data(sleepstudy)
fm1<-lmer(Reaction ~ Days + (1|Subject), sleepstudy)
summary(fm1)
fm2<-lmer(Reaction ~ Days +
2008 Aug 22
1
R CMD check problem
I have a query after finding an error running Rtools on a Windows machine.
I am trying to build an update to the R fda library using Rtools27 under
Windows XP Pro. This is the current fda library on RForge:
http://r-forge.r-project.org/projects/fda
Following R CMD build, R CMD check produces the following error in
00Install.out:
installing R.css in F:/work/RForge/fda.Rcheck
make: ***
2019 Jun 28
2
R-Forge > GitHub?
On Fri, Jun 28, 2019 at 6:01 AM Spencer Graves <spencer.graves at prodsyse.com>
wrote:
[...]
> 1. Clone a copy of "https://github.com/sbgraves237/Ecdat"
> to my local computer and confirm that it works.
>
I suggest you put each package in its own repository, because our R tooling
(e.g. Travis CI, etc.) works best if you do that. This is quite easy to do
2011 Mar 09
2
Problem with vegan package instalation on linux
Hi,
I try to install vegan package on debian linux and I give this error:
=================================================
* installing *source* package 'vegan' ...
** libs
make: *** No rule to make target `cepin.o', needed by `vegan.so'. Stop.
*** arch - Rgnome
Warning in file(con, "r") :
cannot open file '/usr/lib/R/etc/Rgnome/Makeconf': No such file or
2013 Apr 17
1
failed to download vegan
Hello,
This is Elaine.
I am using R 3.0 to download package vegan but failed.
The warning message is
package ‘vegan’ successfully unpacked and MD5 sums checked
Warning: unable to move temporary installation
‘C:\Users\elaine\Documents\R\win-library\3.0\file16c82da53b1b\vegan’ to
‘C:\Users\elaine\Documents\R\win-library\3.0\vegan’
I cannot find the folder \file16c82da53b1b\ below
2001 Nov 13
0
VEGAN: R functions for vegetation ecologists
A colleague has just passed me this interesting
address:
http://cc.oulu.fi/~jarioksa/softhelp/vegan.html
"Vegan: R functions for vegetation ecologists"
"Vegan package is intended to help vegetation ecologists and
other community ecologists to use R. It is not a completely
self-contained package, but it complements other R functions.
.../...
At this first stage, vegan implements
2007 Apr 06
2
R-Forge?
Hello!
I have recently found RForge.net (http://www.rforge.net/) by Simon
Urbanek and found out today that the site is accepting subscriptions.
Great! However, browsing a bit on the site I found a link to another
forge: R-Forge (http://r-forge.r-project.org/).
Is/will the last one be the "offcial" forge for R packages, given that
it has domain r-project.org?
Regards, Gregor
2009 Nov 15
1
Problem building package for R 2.10.0 on Mac OS X
Hi
I have submitted a package (rioja) to CRAN. It checks OK for all R versions and OS's except r-release-macosx-ix86 where it fails when checking the examples. Specifically, it fails because R can't find the package vegan which is needed in a function. Here is the snippet from the check results:
### Begin snippet
checking examples ... ERROR
Running examples in 'rioja-Ex.R'
2006 Nov 10
2
Problems with metaMDS from vegan
Hello all,
I recently used the Vegan library quite extensively (in the context of
text similarity assessment) on an Ubuntu 6.06 LTS system with R version
2.2.1 (2005-12-20 r36812). The Vegan lib is version 1.6-10.
I hit on a problem yesterday, though, when trying to install R and Vegan
on two further computers - one Windows XP and one further Ubuntu 6.06
machine, taking either R version 2.4.0
2011 Sep 01
1
rJava Installation Problems: 'cannot open compressed file 'rJava/DESCRIPTION', probable reason 'No such file or directory''
Good Morning,
I'm trying to install the rJava package on a local (work) machine and having
some trouble. The following occurred in an RGui session.
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
States.1252
[3] LC_MONETARY=English_United States.1252
LC_NUMERIC=C
[5]
2013 Apr 20
0
MOS-test using package vegan
Dear all,
I am using MOStest in vegan to examine the hump-shaped of
a quadratic regression model.
In the manual of vegan, it mentions that the value of MOStest include
isHump.
My result showed the quadratic regression is hump-shaped according to the
p-value (nearly 0).
However, the value isHump did not show up.
Please kindly help where to find isHump.
Further, I do not understand the result of