similar to: make error for R 2.13.0

Regarding Tengfei Yin's post about an error trying to install "cluster" in 2.13.0, I have gotten an error with this package when trying to install the released version of 2.12.0. Here is the output on an Ubuntu Linux system: begin installing recommended package cluster * installing *source* package 'cluster' ... ** libs make[3]: Entering directory

Doing the normal build process [1] for a first time with a R 2.0.0 snapshot -- the Sep 21 version I uploaded to Debian's 'experimental' section two days ago, ended in failure. The package in question is cluster 1.9.6 which should be 2.0.0-ready. The (partial) log follows: ----------------------------------------------------------------------------- [...] g77 -mieee-fp -fPIC -g -O2

Please cc me when replying to the list. With Version 2.1.1 (2005-06-20) on Power Mac G5 running Mac OS X 10.4.2 (8C46): Some compilations work (e.g., MatchIt, RGraphics, Zelig), and some don't, e.g., mgcv, spatstat, and the following (Matrix, cluster): trying URL 'http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/ Matrix_0.98-3.tar.gz' Content type

I had installed R from source on Fedora Core 3. Then I upgraded to Fedora Core 4, but left R alone. R worked fine, until I trued to update.packages(). Even then, many packages updated just fine, but two of them, cluster and mgcv, failed with the following error message (using cluster as an example): gcc -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o meet.o mona.o pam.o

Hi (and Merry Christmas), I am trying to compile R on an AIX IBM machine using the native C and FORTRAN compilers... and everything goes smoothly (congratulations for the configure and make files, this is very nice)... until the pacakge 'cluster' (see dump below).... Any hint ? Laurent 1501-510 Compilation successful for file pam.f. cc -I/data1/laurent/R-1.6.1/include

Hello, I'm using R 1.40 on MacOS X X.1.2 (installed via the fink package manager). To upgrade my installed packages, I tried to use update.packages() today. All went well for most packages, with the exception of KernSmooth and cluster. In both cases, libraries were not found although I think they are present. Here's what happened: ---------------------------------- >

I am having trouble installing cluster from R-1.5.0-recommended : R CMD INSTALL *.tar.gz ... g77 -fPIC -g -O2 -c pam.f -o pam.o g77 -fPIC -g -O2 -c spannel.f -o spannel.o g77 -fPIC -g -O2 -c twins.f -o twins.o cp: cannot access *.so ERROR: compilation failed for package 'cluster' [34] /home/com1/gilp/Rlibs/R-1.5.0-recommended : This is with R-1.5.0 on Solaris 5.8 using gcc

Dear R-list members, I am using the cluster package and by the generation of plot.partition I ran into the problem that an alternative title overlaps the default title. > plot.partition(clara.14,which.plot=2,stand=TRUE, main="Silhouette plot of 14 clusters") The manual states that all optional arguments for clusplot.default may also be supplied to plot.partition(). Altering the

Hi I want to simplify my problem into a prototype, how to write a function to get all the object in your current environment, e.g. .GlobalEnv, and print their mode? For example, if I have object a,b,c... in my environment, a=1;b='test';c=matrix(0,3,3)..... I want to write a function myfun(), when I run myfun(), this retrieve all the objects in my environment automatically and print

Dear all yesterday I got around to install R-1.5.1 on my machine at home which, admittedly, is running a very old version of RedHat Linux. I noticed two things: 1) My pdflatex version is too old to produce the pdf version of the manuals. `./configure' checks whether a recent version of makeinfo is installed and tells you whether you can produce the info version or not. (I was told I

Hi dear all I am currently using Ubuntu 9.10 (karmic) and R 2.10, I can find a R release that support "karmic" in cran under ubuntu directory, I plan to update my laptop to Ubuntu 10.04 after April 30, since I have to use some new features or new version in it, e.g. QT 4.6, I don't know if there is going to be a R release that will support this newly released Ubuntu? Thanks in

Hi I have a problem using the package cluster on my binary data. I want to try mona at first. But i get the an error. hc<-read.table("all.txt", header=TRUE, sep="\t", row.names=1) srt(hc) `data.frame': 51 obs. of 59 variables: $ G1p : int 2 1 1 1 1 1 1 1 1 1 ... $ G1q : int 1 1 1 1 1 1 1 1 1 1 ... $ G2p : int 1 1 1 1 1 1 1 1 1 1 ... $ G2q : int 1 1 1 1 1 1

How to Paint Mona Lisa with MS Paint <http://arts-artists.blogspot.com/2007/03/how-to-paint-mona-lisa-with-ms-paint.html> Amazing Art work<http://arts-artists.blogspot.com/2007/03/how-to-paint-mona-lisa-with-ms-paint.html> http://arts-artists.blogspot.com/2007/03/how-to-paint-mona-lisa-with-ms-paint.html --~--~---------~--~----~------------~-------~--~----~ You received this message

Dear All, Thank you kindly for such detailed replies. I was looking to overlay data using algorithms so that i am able to tell which genes are differentially expressed due to changes in copy number. I did a pubmed search and found only 7 literature pieces all of which use in-house algorithms. I am yet to explore Gviz since it wouldn't work on R 2.14, would try it after upgrading to R 2.15.

Hi dear all I am currently using Ubuntu 9.10 (karmic) and R 2.10, I can find a R release that support "karmic" in cran under ubuntu directory, I plan to update my laptop to Ubuntu 10.04 after April 30, since I have to use some new features or new version in it, e.g. QT 4.6, I don't know if there is going to be a R release that will support this newly released Ubuntu? Thanks Best

Hello all, I what to print the banner plot that is output from the mona method in the cluster package but the problem is I dont want to print all that red ink. Here is an example: data(animals) ma <- mona(animals) ma ## Plot similar to Figure 10 in Struyf et al (1996) plot(ma) I can change the bar color by using the argument col=c(0,0) - plot(ma,col=c(0,0)) - but then the variable labels also

Hi! I am trying to calculate a dissimilarity matrix using daisy. The matrix vectver is binary as i test with: > levels(as.factor(vectver)) [1] "0" "1" But the call to daisy gives me the following error message.: > dfl1 <- daisy(vectver, type = list(asymm = c(1:length(vectver[,1])))) Error in daisy(vectver, type = list(asymm = c(1:length(vectver[, 1])))) : at least

On Tuesday 28 June 2005 15:30, r-help-request at stat.math.ethz.ch wrote: Re : 37. Re: A. Mani : colours in Silhouette (Mulholland, Tom) > > Message: 37 > Date: Tue, 28 Jun 2005 09:08:24 +0800 > From: "Mulholland, Tom" <Tom.Mulholland at dpi.wa.gov.au> > Subject: Re: [R] A. Mani : colours in Silhouette > To: <a_mani_sc_gs at vsnl.net>, <r-help at

Dear All, I came across an error message recently when constructing a reference class, an example is attached below, it looks like only if I call a specific method in advance, otherwise it cannot be found in defined method without using .self, this make it difficulty that sometimes in my initialize method, I need to call other method defined in the same reference class, the workaround for this is

I don't know if there is some fault in compiling or a bug of the new R-1.7.0 version: cl.pam.2 <- pam(as.dist(1-cor(mel.data)),2) plot(cl.pam.2) perform a right partitioning and silhouette plot on the old R-1.6.2 instead "Error in clusplot.default(x$diss,...... ; x is not numeric" is the output on the new R-1.7.0. Same platform: RH8.0 i686. Some suggestions? A.S.