similar to: R 2.12.0 alpha/beta/rc warning: spurious or not?

Hi, I run into a problem with "R CMD Rd2dvi" command: it gives me "File `Rd.sty' not found" error (See the output message on the bottom). I get the same error when running "RCMD check". My system is: Windows 2000, R version 2.0.1, MiKTeX version 2.4. I do have a Rd.sty file in R_HOME/share/texm directory. I looked through newsgroups for any related discussions

Hi, I run R 2.5.1 on Mac OS 10.4.10 and fail to build a package manual. Below is the transcript. The problem is a "pdflatex: command not found" error but I think that I have a fully working latex install (installed with iInstaller) as I use TeXShop with no problem. Could someone help? Jean-Pierre -----------------------------------------------------------------------------

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

Hi, 'R CMD build' (with R 2.12.0 RC) fails to clean the src/ folder on Windows: D:\biocbld\bbs-2.7-bioc>ls meat/BUS/src BUS.cpp BUS.h D:\biocbld\bbs-2.7-bioc>R\bin\R CMD build meat\BUS * checking for file 'meat\BUS/DESCRIPTION' ... OK * preparing 'BUS': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package

Dear all, I am getting an R CMD check warning about the PDF manual. I am having a hard time finding out what is wrong, here is the log of the Rd2pdf call. The full check (and other) log is at https://api.travis-ci.org/jobs/46373922/log.txt?deansi=true if anybody is interested, and the package itself is here: https://github.com/metacran/r-builder/tree/bintex/rbuildertest Thanks, Best, Gabor

On the local machine the command R11 CMD Rd2pdf survfit.Rd works fine. R12 CMD Rd2pdf survfit.Rd fails with the message below. Converting Rd files to LaTeX ... survfit.Rd Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running 'texi2dvi' on 'Rd2.tex' failed. Messages: sh: texi2dvi: command not

If I execute R CMD Rd2dvi foo.Rd I get messages of the form: Converting Rd files to LaTeX ... foo.Rd Creating dvi output from LaTeX ... Saving output to 'foo.dvi' ... cp: .Rd2dvi4366/Rd2.dvi: No such file or directory Done xdvi-xaw: Fatal error: foo.dvi: No such file. Indeed if I add the --no-clean flag and then cd to the .Rd2dvi<whatever> directory, I find that there is no

Hi, Due to a change in Rd.sty a few days ago (https://github.com/wch/r-source/commit/620eb9a#diff-3bf3d821c6faae50cd6ec931f6f63296L272), the default installation of TeXLive 2009 or 2012 no longer works when building Rd to PDF. The error log is like this: =============== Converting Rd files to LaTeX ..... Creating pdf output from LaTeX ... Error in texi2dvi(file = file, pdf = TRUE, clean = clean,

I'm trying to use R CMD Rd2dvi and I end up at a Latex (I think) command prompt. What's missing or what am I suppose to do? Paul Gilbert _______ paul at breman:/apps/dse-versions/2000.6/dse#R CMD Rd2dvi syskern This is TeX, Version 3.14159 (Web2C 7.3) (Rd2.tex LaTeX2e <1998/12/01> Babel <v3.6k> and hyphenation patterns for american, french, german, ngerman, nohyphenation,

Hello, I'm currently working on making Rcpp use the feature described here more: http://cran.r-project.org/doc/manuals/R-exts.html#Linking-to-native-routines-in-other-packages To give more context, Rcpp has for a long time built what we called "the Rcpp user library", i.e. a library we could link against user the linker. We were then producing appropriate linker flag with

Hi, I am a newbie to Rcpp packages, and got problems in having basic set-ups for Rcpp under windows xp. Here is the list I have done. 1) installed Rtools and have no problem in compiling .c file. 2) installed Rcpp packages 3) set enviroment variables 'path' to make C:\Program Files\R\R-2.12.0\library\Rcpp\include\ searchable The sample C++ code I used is from the original website:

Hi, I am writing a R package and having a bit of trouble to have the C++ code working. I was planing using the .C interface function, however I found the comment (Use of ?.C? for C++ is now deprecated and will be removed in R 2.12.0.) in the R-exts manual. So this interface function should not be used anymore - .Call() or Rcpp instead? What is the reason for the deprecation? Thanks, Florian

I'm not sure what the usual "ping time" is for llvm-dev, but may I ask if there are any updates on this? It appears that the following lines are the root cause of the reordering (https://github.com/llvm/llvm-project/blob/fdcb27105537f77c78c4473d4f7c47146ddbab69/llvm/lib/Transforms/InstCombine/InstructionCombining.cpp#L2175): // Handle gep(bitcast x) and gep(gep x, 0, 0, 0). Value

Hi all, I'm writing a vignette for my package, and I would like to include some of the package help files in there as well. Is there an easy way of doing so? I tried using R CMD Rdconv to generate latex files from .Rd files but I am not sure how to include these into a .Rnw file (ie the vignette source). The resulting file from Rdconv do not readily compile using latex ... The other option I

Dear users, I'm struggling with encoding issues for documenting some functions. The Rd format is incradible simple, however, because I'm dealing with diacritic strings, I seted up encoding in several Rd files as latin1. Under R, using the checks available in the package 'tools it performs pretty well. But when check the package as cran, I got several encoding issues. Have any one

Hello everybody I'm am trying to build a pdf out of the Rd files that i wrote for a package, so that I can attach it to my thesis. if i Run Rd2pdf (or Rd2dvi) I get this error massage: Hmm ... looks like a package Converting Rd files to LaTeX . Creating pdf output from LaTeX ... Error in texi2dvi("Rd2.tex", pdf = (out_ext == "pdf"), quiet = FALSE, : Running

Hello: 1. How can I tell when the development version of Rtools has changed? For the past few years, I've installed the development version of R tools with each new release of R. I encountered problems with this a few days ago, so I rolled back to Rtools212.exe. Unfortunately, I seem to have more problems with that version. My latest install was under Windows 7 Home Edition.

Dear list, I am trying to produce a pdf manual using Rtools (version 3.1.0.1936) on Windows 8 (64-bit). I am also aware of the inconsolata issue posted in the forum (https://stat.ethz.ch/pipermail/r-devel/2013-June/066850.html), and then I have installed the patched version of R-3.0.1. However I still have some errors with the following message: R CMD Rd2pdf mypack Hmm ... looks like a package

Hi, I am unable to install tibble, a required package for ggplot2 in R. I am running R (version 3.3.2 ) in RStudio (version 1.0.44). My OS is ubuntu 14.04 (64 bits). I get the same error when running R from the terminal. Any help would be gretly appreciated. Kind regards, Terje **************** Error messages: **************** install.packages("tibble") Installing package into

I am running into a wall getting my system to work with rcpp and inline. Following Dirk's advice on stackoverflow, I hope someone is able to help me. My steps were to install MinGW 32 bit first, then installing Rtools, I disabled MinGW's entry in the PATH. I am trying to get the following code to work: library(Rcpp) library(inline) body <- ' NumericVector xx(x); return wrap(