similar to: Problem with WARNING...headers with CRLF line endings

Dear all When trying to install my package on Windows XP on my Mac, I get the following error: ---------- Making package xps ------------ ... ... xpsDict.cxx "C:\Programme\Microsoft Visual Studio 9.0\VC\bin/link" /dll /def:xps.def /out:xps.dll fp10.obj -opt:noref -nologo -include:_G__cpp_setupG__Hist -include:_G__cpp_setupG__Graf1 -include:_G__cpp_setupG__G3D

Dear all, Since many years the following C++ code does compile on ALL Bioconductor servers (Linux, Windows, Mac) without any warnings: Int_t numsels = 0; //number of selected entries ... for (Int_t i=0; i<size; i++) { numsels = (arrMask[i] == 1) ? ++numsels : numsels; }//for_i Even on the recently added release server 'zin2' Linux (Ubuntu 12.04.4 LTS) the

With C:\Users\User>R --version R version 2.14.0 RC (2011-10-23 r57410) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-mingw32/x64 (64-bit) running download.file('http://www.ebi.ac.uk/microarray-as/ae/files/E-TABM-25/E-TABM-25.raw.1.zip', tempfile()) sometimes gets 52% (according to the dialog box) of the way through, and then

Hi Mr Tierney, I have noticed an error message from R 1.12.x's CMD check for a while (apparently prof Ripley completely rewrote CMD check in R 1.12+) e.g.: http://bioconductor.org/checkResults/2.7/bioc-LATEST/snpMatrix/lamb2-checksrc.html ---------------- * checking R code for possible problems ... NOTE Warning: non-unique value when setting 'row.names': ?new? Error in

Dear R developers, I am developing an R package which returns strings with new line codes. I am not sure if I should use "\r\n" or "\n" in my returned strings on Windows platforms. What is the recommended best practice for package developers (and code in base R) for coding new lines in strings? And just out of curiosity: What is the reason (or history) for preferring

Hi. I've made a strange observation. When having Dovecot (at least) with maildir and moving (via IMAP) mail received by some client (Evolution 3.4) into it the following happens: Regardless of whether the mail was originally(!) set with CRLF or LF (i.e. when I use netcat to submit the plain SMTP to the relaying MTA). When the client (Evolution) had received the mail via POP3 before moving

Hi, More about the new --resave-data option As mentioned previously here https://stat.ethz.ch/pipermail/r-devel/2011-April/060511.html 'R CMD build' and 'R CMD INSTALL' handle this new option inconsistently. The former does --resave-data="gzip" by default. The latter doesn't seem to support the --resave-data= syntax: the --resave-data flag must either be

Hi, Kind of related to the new R-based 'R CMD build' script being sometimes confused on Windows (as reported here a couple of weeks ago https://stat.ethz.ch/pipermail/r-devel/2010-June/057759.html), I also started to observe that the new R-based 'R CMD check' script gets also confused sometimes on Windows in a random way. It seems that sometimes (maybe 1% of the times) running

Hi, After updating R-2.12 on the Bioconductor build system about 1 week ago (we update R every 4-6 weeks for our devel builds), we've started to see something never seen before on Windows: for some BioC packages, 'R CMD build' would produce no output at all (0 byte) and, of course, no source tarball. Even though, the code returned by the command is 0! See an example of this is here:

Dear Dirk, Yes, I know, however forget for one moment R. If I use tar independent of R it still should not create these hidden files. BTW, do you know where these hidden files are stored on the Mac? Best regards, Christian On 09/26/15 23:01, Dirk Eddelbuettel wrote: > > On 26 September 2015 at 22:41, cstrato wrote: > | Dear Simon, > | > | Thank you very much for your help, it

On 25/07/2020 4:48 p.m., nospam at altfeld-im.de wrote: > Dear R developers, > > I am developing an R package which returns strings with new line codes. > I am not sure if I should use "\r\n" or "\n" in my returned strings on Windows platforms. > > What is the recommended best practice for package developers (and code in base R) for coding new lines in

Dear all, For certain reasons I have to compile the source code of my package on Windows XP using Microsoft Visual Studio 9.0, thus I had to create a "Makefile.win". Now I have a question regarding compiler options /MT vs /MD for Makefile.win. The following partial output shows that when building my package on Windows XP using "R CMD build --binary xps" with compiler

--- perl/lib/Win/Hivex/Regedit.pm | 1 + 1 file changed, 1 insertion(+) diff --git a/perl/lib/Win/Hivex/Regedit.pm b/perl/lib/Win/Hivex/Regedit.pm index 34426f1..2b17036 100644 --- a/perl/lib/Win/Hivex/Regedit.pm +++ b/perl/lib/Win/Hivex/Regedit.pm @@ -144,6 +144,7 @@ sub reg_import # this is fairly common in pasted regedit files. $lineno++; chomp; + s/\r$//;

Dear all, When running R CMD check on my Mac (Yosemite 10.10.5) I get suddenly NOTEs and WARNINGs that my tar.gz file does contain hidden files. However, when checking the corresponding directories with 'ls -al' (or with mc) none of these files does exist!! (with exception .BBSoptions). Here is a partial output of 00check.log: * using log directory

Dear all, When running function 'testQAReport()', which uses function 'buildVignettes()' to create a pdf-file I get the following error: > source("testQAReport.R") > testQAReport() Error in .get_package_metadata(pkgdir) : Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing. Since I did not get this error in earlier versions of R, could you

Dear Simon, Thank you very much for your help, it did solve my problems!! Great! I have googled COPYFILE_DISABLE and found the following site which does explain the issue with tar on Mac OS X, see: http://unix.stackexchange.com/questions/9665/create-tar-archive-of-a-directory-except-for-hidden-files Instead of doing: $tar czf xps_1.29.2.tar.gz xps I did now: $COPYFILE_DISABLE=1 tar czf

I thought I had read somewhere that you can prevent the adding of the ^M's when copying a file to a samba share. (Such as doing an ascii ftp) Now I cannot find where I read this. I have a constant need to transfer excel files containing data to be uploaded and want to use samba to get these to the server. Can this be configured into Samba. I am using 2.0.6 on Solaris 2.6. When using

Dear all, Please, please I really need your help, since I am not able to solve the problem myself: It seems that until now most Windows users of my Bioconductor package "xps" use Windows XP, but recently a user tried to use it on Windows Vista where it crashed R immediately. Since I assume that some users may migrate to the upcoming Windows 7 where the problem will be the same, I

Dear all Below is the code for "scriptPreFilter.R" which gives the following result: > source("scriptPreFilter.R") > prefltr <- new("PreFilter", mad=c(0.5,0.01)) [1] "------initialize:PreFilter------" [1] "------initialize:Filter------" > str(prefltr) Formal class 'PreFilter' [package ".GlobalEnv"] with 2 slots

Dear all, While R CMD check and R CMD INSTALL have always created the vignettes on R-2.12.1 or any earlier versions of R, I am no longer able to build the vignettes on R-2.13.0. Instead R CMD check gives me the following output: * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... WARNING Package vignette(s) without corresponding PDF: