similar to: Question when compiling source code with VC++

Dear all, When running R CMD check on Windows XP to test my package I get the following warning message: "* checking line endings in C/C++/Fortran sources/headers ... WARNING Found the following sources/headers with CR or CRLF line endings: src/xpsDict.h" The problem is that this file is created by the compiler AUTOMATICALLY during the compilation process, and since the file is

Dear all, For certain reasons I have to compile the source code of my package on Windows XP using Microsoft Visual Studio 9.0, thus I had to create a "Makefile.win". Now I have a question regarding compiler options /MT vs /MD for Makefile.win. The following partial output shows that when building my package on Windows XP using "R CMD build --binary xps" with compiler

Dear all, Please, please I really need your help, since I am not able to solve the problem myself: It seems that until now most Windows users of my Bioconductor package "xps" use Windows XP, but recently a user tried to use it on Windows Vista where it crashed R immediately. Since I assume that some users may migrate to the upcoming Windows 7 where the problem will be the same, I

Hi Christian, Chuck (and lists) It seems that the problem may be the strange behaviour of 'unstack' inside a function. See this thread in the R mailing list: http://tolstoy.newcastle.edu.au/R/help/04/03/1160.html Anyway, I got round the problem by using 'aggregate' instead of converting to a list and then tapply to sum values of metric. Probably more efficient as well. Thanks

Dear Debian/Ubuntu experts, For the second time users of my BioC package reported problems when trying to compile it on Debian/Ubuntu. The error is always the same: "'wcstombs' was not declared in this scope", see: https://www.stat.math.ethz.ch/pipermail/bioconductor/2010-February/031739.html https://stat.ethz.ch/pipermail/bioconductor/2009-August/029192.html Since I have no

You reall have only one parameter in your model, c = a/b. You can't identify both a and b from your model, therefore, you should fit the linear model: lm(z ~ c* sin(x)/x) Ravi. ----- Original Message ----- From: cstrato <cstrato at aon.at> Date: Monday, February 2, 2004 2:28 pm Subject: [R] Robust nonlinear regression - sin(x)/x? > Dear all > > Since I did not receive any

promptClass fails to identify methods associated with the class. Here is a fix: Index: promptClass.R =================================================================== --- promptClass.R (revision 41719) +++ promptClass.R (working copy) @@ -165,7 +165,7 @@ if (nmeths > 0) { .meths.body <- " \\describe{" for (i in 1:nmeths) { - .sigmat

Dear all, On the CRAN website http://cran.r-project.org/ it is currently not possible to get to the packages. Clicking on "Packages" or on "Contributed extension packages" results in Error 404: Object not found!, see: http://cran.r-project.org/web/packages/ Best regards, Christian _._._._._._._._._._._._._._._._._._ C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a

Dear all, To create a *.pdf file from a *.Rnw file I do: olddir <- getwd(); setwd(outdir); tryCatch({Sweave("QAReport.Rnw"); tools::texi2pdf("QAReport.tex", clean=TRUE) }, finally = setwd(olddir) ); This works fine, however 'clean=TRUE' does only work when: outdir <-

Dear all, Since many years the following C++ code does compile on ALL Bioconductor servers (Linux, Windows, Mac) without any warnings: Int_t numsels = 0; //number of selected entries ... for (Int_t i=0; i<size; i++) { numsels = (arrMask[i] == 1) ? ++numsels : numsels; }//for_i Even on the recently added release server 'zin2' Linux (Ubuntu 12.04.4 LTS) the

Dear Simon, Thank you very much for your help, it did solve my problems!! Great! I have googled COPYFILE_DISABLE and found the following site which does explain the issue with tar on Mac OS X, see: http://unix.stackexchange.com/questions/9665/create-tar-archive-of-a-directory-except-for-hidden-files Instead of doing: $tar czf xps_1.29.2.tar.gz xps I did now: $COPYFILE_DISABLE=1 tar czf

Dear all, I am just writing the documentation file for S4 class 'QualTreeSet' and get the following warning with R CMD check: * checking for missing documentation entries ... WARNING Undocumented S4 methods: generic 'initialize' and siglist 'QualTreeSet' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the

Dear all, When running R CMD check on my Mac (Yosemite 10.10.5) I get suddenly NOTEs and WARNINGs that my tar.gz file does contain hidden files. However, when checking the corresponding directories with 'ls -al' (or with mc) none of these files does exist!! (with exception .BBSoptions). Here is a partial output of 00check.log: * using log directory

Dear all, Since my package is based on S4 classes, I would like to know how to add a slot to an existing S4 class without breaking the code of users of my package. Assume the following S4 class: setClass("MyClass", representation(name = "character", type = "character", data = "data.frame" ), prototype(name =

Dear all, While R CMD check and R CMD INSTALL have always created the vignettes on R-2.12.1 or any earlier versions of R, I am no longer able to build the vignettes on R-2.13.0. Instead R CMD check gives me the following output: * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... WARNING Package vignette(s) without corresponding PDF:

Dear all Below is the code for "scriptPreFilter.R" which gives the following result: > source("scriptPreFilter.R") > prefltr <- new("PreFilter", mad=c(0.5,0.01)) [1] "------initialize:PreFilter------" [1] "------initialize:Filter------" > str(prefltr) Formal class 'PreFilter' [package ".GlobalEnv"] with 2 slots

Dear all When trying to install my package on Windows XP on my Mac, I get the following error: ---------- Making package xps ------------ ... ... xpsDict.cxx "C:\Programme\Microsoft Visual Studio 9.0\VC\bin/link" /dll /def:xps.def /out:xps.dll fp10.obj -opt:noref -nologo -include:_G__cpp_setupG__Hist -include:_G__cpp_setupG__Graf1 -include:_G__cpp_setupG__G3D

Christian, those are resource forks from your files - possibly maintained by your (likey very old?) editor. First, is seems that you are not creating the tar ball correctly - the correct way is to use R CMD build which should not include resource forks nor files on the ignore list. That said, if for some reason you intend to create is by hand (not recommended), you may want to set

Dear all, When running function 'testQAReport()', which uses function 'buildVignettes()' to create a pdf-file I get the following error: > source("testQAReport.R") > testQAReport() Error in .get_package_metadata(pkgdir) : Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing. Since I did not get this error in earlier versions of R, could you

Yes, it should find windows.h with the default configuration. But you have to be suspicious of beta code that Microsoft gives out for free. It might just be very buggy, or it might be deliberately crippled. Considering the price tag on Visual Studio, it's one or the other (and probably both). Out of curiosity, did it accept the solution and project files as is, or did it want to