Displaying 20 results from an estimated 200 matches similar to: "proper link to ACML blas | compiling 2.9.0"
2009 Jun 26
1
can't use ATLAS or ACML | 2.9.0
So, tried again from scratch. Again, CentOS 5.3, which is essentially
RHEL 5.3.
./configure --with-blas="-L/opt/acml4.3.0/gfortran64/lib -lacml"
In config.log, get things like
configure:37199: checking for dgemm_ in -L/opt/acml4.3.0/gfortran64/lib
-lacml
configure:37230: gcc -std=gnu99 -o conftest -g -O2
-I/usr/local/include -L/usr/local/lib64 conftest.c
2006 Jul 24
1
R and ACML
While I recently received some very helpful files and email from Kevin
Hendricks for compiling with ATLAS, thought I'd first have a stab at
ACML. Having problems, which I suspect are trivial to solve:
1. machine is running RHEL 4, meaning, it uses gcc 3.4.5 out of the box,
and g77. In my experience, over-riding RHEL's choice, and manually
upgrading to gcc 4.x.x (and, as a consequence
2009 Jun 26
1
problems compiling for RHEL 5.3 x86_64
Well, CentOS 5.3, which amounts to the same thing.
I recently decided to upgrade my main research machine from Fedora Core
8 -> CentOS 5.3. Basically, I was looking to move to a distro with
longer 'term-of-life' than the release schedule for Fedora currently
allows. The machine is a multi-Opteron box, so both 32- and 64-bit apps
natively supported. Since I do a lot of 'linear
2008 Jun 13
2
compiling 2.7.0 GNU/Linux | BLAS & Lapack query
Greetings -
For a host of reasons I chose (was forced) to upgrade my multi-Opteron box
from Fedora 7 -> Fedora 8. In the process, I also updated the ACML I had
installed from 4.0.0 to 4.1.0.
While I get no errors (that I can find) in the config -> make -> make
install sequence, I'm pretty sure (based on some benchmarks) that I'm not
getting BLAS and/or Lapack to compile in. So,
2007 Aug 24
2
config error during 2.5.1 compile
Have been running 2.5.1 on my multi-pro Opteron box running Fedora Core
5 with no problems. Had compiled previously with no problems. However,
for a variety of reasons (mostly due to ACML upgrade), I tried a
recompile using the following sequence of commands (note I'm compiling
in ACML support for blas):
LD_LIBRARY_PATH=/opt/acml3.6.1/gfortran64/lib
export LD_LIBRARY_PATH
./configure
2005 Sep 06
1
Build R with AMD pgi compiled ACML library
Hi,
Has anyone had any luck in using portland group compiler to build
R(-devel) with AMD's pgi compiled ACML library? I've downloaded the
packages and set LD_LIBRARY_PATH, and run configuration script as follow:
% ./configure --prefix=/usr/local/R.pgcc --with-blas='-lacml'
However, it failed to pick up double complex BLAS,
checking for sgemm_ in -lacml... yes
checking
2006 Oct 16
3
x86_64, acml-3.5.0-gfortran64 and lme4
I am encountering segfaults when checking the lme4 package on an
Athlon64 system if I use the acml blas. R was built as a 64-bit
application using the GCC 4.0.3 compiler suite including gfortran.
The version of acml is 3.5.0 gfortran64.
I do not encounter the segfaults when I compile R with R's built-in
BLAS. The errors occur in the first example in lme4 in a call to
lmer. It looks like
2005 Dec 14
1
Building R-devel with ACML
I'm trying to build R-devel with AMD's ACML. I downloaded version 3.0.0
64bit for gfortran (acml-3-0-0-gfortran-64bit.tgz) and copied the
libraries to /usr/local/lib. When I configure R to build against the
ACML library, how do I know if the library has been detected and will be
used?
I run 'configure' with the '--with-blas=-lacml' flag and am using gcc
4.0.2 (with
2006 Jul 22
1
compile R with ACML support | RHEL 4
Greetings -
I'm trying to compile R under GNU/Linux (RHEL 4) on a multi-Opteron box,
with ACML support.
First, I downloaded and installed ACML 3.5 - GNU version, although I'm
not entirely sure what the differences are - from the AMD website. The
ACML libraries were installed to /opt/acml3.5.0/
Second, I ran ./configure --with-blas='-lacml'
The configure went fine,
2009 Apr 30
1
[Fwd: problems installing rjags | tcltk]
Quick followup. Confirmed that TCl/Tk are both installed on the machine
(they are, in both 32- and 64-bit flavours), as are all tcl and
tk-related libs, devel packages, and about everything else I could find.
It occurred to me that perhaps the R I compiled isn't 'tcltk' aware. I
checked the config.log, and there is some hint that this might be the
case. Just before ## File
2010 Aug 24
1
Trouble configuring R to use ACML
I am trying to get R to use the ACML BLAS, specifically the 'mp' version for
multithreading.
I have installed acml-4-4-0-gfortran-64bit
I added /opt/acml4.4.0/gfortran64_mp/lib to $LD_LIBRARY_PATH.
I ran: sudo ./configure --with-blas="-L/opt/acml4.4.0/gfortran64_mp/lib
-lacml_mp"
At the end of the configuration, the only external library listed is
readline, and at the end
2004 Mar 25
1
yet another fast BLAS (from AMD this time)
Dear R-devel,
Has anyone played with this?
http://www.amd.com/us-en/Processors/DevelopWithAMD/0,,30_2252_2282,00.html
<http://www.amd.com/us-en/Processors/DevelopWithAMD/0,,30_2252_2282,00.html>
.
I'll probably give it a shot...
Best,
Andy
Andy Liaw, PhD
Biometrics Research PO Box 2000, RY33-300
Merck Research Labs Rahway, NJ 07065
mailto:andy_liaw@merck.com
2006 Sep 28
1
unable to load lapack.so
Hi,
I'm having problems using ACML with R. I made two changes in
config.site by setting
LDFLAGS="-L/opt/acml3.1.0/gnu64/lib"
BLAS_LIBS="-lacml"
./config and make go through but when I try to use the lm() function,
I get the error message
Error in chol2inv(Qr$qr[p1, p1, drop = FALSE]) :
lapack routines cannot be loaded
In addition: Warning message:
unable to load
2010 Aug 06
0
Problems using external BLAS
I have problems building R 2.11.1 with an external BLAS. I've tried
several with several libraries:
# ACML:
export LD_LIBRARY_PATH=/site/VERSIONS/acml-3.6.0/gfortran64_int64/lib
BLAS=--with-blas="-L/site/VERSIONS/acml-3.6.0/gfortran64_int64/lib -lacml"
LAPACK=--with-lapack
# MKL 11:
BLAS=--with-blas="-L/site/VERSIONS/intel-11.1/mkl/lib/em64t -lmkl_gf_lp64 -lmkl_sequential
2004 Oct 19
1
lapack test failed (PR#7294)
Hallo,
I've just installed R on our Opteron System (AMD Opteron 246). Running make check-all
results in a failure during the lapack test:
> ## ------- tests of random real and complex matrices ------
>
> ## 100 may cause failures here.
> eigenok <- function(A, E, Eps=1000*.Machine$double.eps)
+ {
+ V <- E$vect; lam <- E$values
+
2014 Feb 25
1
acml blas+lapac in R
dear experts
I'd like to ask you, probably on behalf all of us who try to
use AMD's ACML for performance optimisation a question.
There seem to be problem when these two, R and ACML are
coupled,
described here:
http://devgurus.amd.com/message/1255852#1255852
I'd like to ask, while not being a programmer/developer, how
incorrect and dangerous this might be?
maybe such a setup must
2007 Nov 26
1
Problem with configure's detection of glob on 2.6.0 (PR#10468)
Full_Name: Mike Pacey
Version: 2.6.0
OS: SuSe Linux 9.3 x86_64
Submission from: (NULL) (194.80.32.10)
A "vanilla" version of R configures and compiles without a problem on my system.
Switching to using the PGI compiler configures correctly (see the values at the
bottom fo thismessage), but compilation aborts with:
pgcc -I../../src/extra/zlib -I../../src/extra/bzip2
2005 Oct 12
0
additional comments on building R with PGI compiler
Hi,
I have additional comments on building R with PGI compiler.
If one wants to use external BLAS library, then pgf90 instead of pgf77
should be used, and BLAS_LIBS flags should be set.
e.g.
F77 = $PG_HOME/bin/pgf90
BLAS_LIBS='-L/opt/acml2.7.0/pgi64/ -lacml' # for ACML library
BLAS_LIBS='-L/usr/lib64 -lg2c -lblas' # for generic BLAS
library that comes
2006 Mar 10
2
problem building R-patched on x86-64 with PGI 6.1
Dear R-devel,
[I'm not sure if this is appropriate for R-devel. If not, I'm more than
happy to move it to R-help.]
As those of you who saw my post on R-help know, I've been trying to build
R-patched on a dual Opteron box running Scyld Beowulf, using the PGI 6.1
compilers. The build went fine, but I couldn't get it to pass make
check-all. Jennifer Lai, who reported success with
2008 Jul 12
1
Error of exp() in a dll from Fortran
Hi,
I have an error happened when I use exp() in my Fortran code. My Fortran
code is
SUBROUTINE f(n,c)
REAL, INTENT(IN) :: n(10)
REAL, INTENT(OUT) :: c(10)
INTEGER :: k
DO k=1, 10
c(k) = exp( n(k) )
END DO
END
I compiled the fortran code as a dll
Rcmd SHLIB -o f.dll f.f -L -lacml
Then I loaded the dll file to R, and try some number
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