similar to: R 2.9.0 slower than R 2.8.1 for the data.frame function

Just wanted to alert everyone regarding a problem that I only experience with R2.9.0 and not with R2.8.1 when I run both using exactly the same script and the same data. Here is what I do with my data "MyData", 2 predictors (V1 and V2) and my survival DV "Depvar": library(survival)

Hi R-Helpers, I am having difficulty plotting a coxph model with two predictors. My predictors are "morder" (a factor with five levels where the mean of each level is plotted as a separate line) and tmean (continuous). When I run a model with just morder it is fine and the plot is fine. When I add tmean, the coxph model runs fine but this model will not plot and I receive an

Hello, I have a MANOVA model and I want to test the following hypothesis: LBM = 0 where B is the parameter estimates. Is there any function to do this in R? Cheers, Philippe -- Philippe Hup? Institut Curie, CNRS UMR 144, INSERM U900 26 rue d'Ulm 75005 Paris - France Email : Philippe.Hupe at curie.fr T?l : +33 (0)1 56 24 69 91 Fax: +33 (0)1 56 24 69 11 website :

Hi all, I'm having some trouble in understanding how to ste the Error() term in the aov() function when fitting a hierarchical ANOVA. I have data concerning the expression of 2 miRNAs in 3 different cell lines, with 2 different extraction methods. The data is organized as follows : Line Extraction Target Expression 1 BC54 miRNA RNU48 22.48 2 BC54 miRNA

Hi, We recently switched from R2.7.0 to R2.8.1 but having problems tracking down this 'invalid multibyte character' encoding issue. Can someone point us how to solve this? > sessionInfo() R version 2.8.1 (2008-12-22) x86_64-unknown-linux-gnu locale:

I am using R2.9.0 under Windows XP SP 2 (32-bit). I just discovered a rather excellent programming font (http://www.dafont.com/bitstream-vera-mono.font). Since it isn't one of the fonts listed as an option in the RGui Configuration Editor, I manually editted my RConsole file font line to font = Bitstream Vera Sans Mono When I opened R, the text in the console displayed correctly, but

Hi, I am compiling R2.8.1 on a Sun M4000 machine with Solaris 10. I am using Sun Studio 12. I get the following error: cc -xtarget=native64 -G -L/usr/sfw/lib/sparcv9 -L/opt/csw/lib/sparcv9 -o grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o mkdir ../../../../library/grDevices/libs Warning in solve.default(rgb) : unable to load shared library

Hi all, I want to install the package Rgraphviz on R2.9.0 (after installing Graphviz 2.22). I have not been successful in installing from the binary on a win XP pc. After looking up previous posts on the R and bioconductor lists, I installed the Rtools29. I have checked that the paths are correctly listed on the environmental variables window. I would now like to know how I can install with

Hi, I've been trying to set the directory for choose.files as follows: [R2.9.0 running on XP] setwd("C:/Documents and Settings/2/Data") getwd() infile2 = choose.files(filters = Filters[c("txt","All"),], caption = "Choose ECD datafile") #<...do a bunch of stuff...> It appears the working directory isn't updated until after choose.files()

Hi, Where can I find the source code for nlm()? I dowloaded the R2.8.1.tar.gz file and looked at all the .c and .f files, but couldn't find either nlm.c or nlm.f There is an nlm.r file, but that is not useful. Thanks for any help, Ravi. ---------------------------------------------------------------------------- ------- Ravi Varadhan, Ph.D. Assistant Professor, The Center on Aging

Hi, I'm using R2.8.1 in windows vista and the scan function to load in my data. That works all fine except that I get a message after the scan function finishes. It tells me how many items the function has read. For example "Read 202035 items". That would not be a problem but this is printed in the stderr stream which causes a problem in a different software I run the r scipt in. I

Hi folks, I am currently having the problem with using R 2.8.1 that I cannot install some of packages from CRAN or local drive and somebody may be able to help me. ex) faraway package and lme4 package. I have downloaded them in my hard drive as local, but still R was unable to find the package (message showed up as no such file). I could download most packages, but not all what I want. I showed

Tengo instalado el R2.9.0 y el TinnR 1.17.2.4 y cuando abro Tinn R no me detecta q el R este abierto por lo cual no me permite correr ningun programa, alguien sabe q puede estar pasando? Saludos -- José "... hoy el cambio cualitativo la liberacion, implica, cambios organicos, de instinto y biologicos, AL MISMO TIEMPO q cambios politicos y sociales" H. M. [[alternative HTML version

I am trying to specify a legend title to be other than the variable name, but I find that the legend splits because scale_shape() takes effect but scale_colour() does not. Can someone spot my error? Here's some toy code that produces the problem on my system (R2.8.1, windows, today's CRAN package updates): library(ggplot2) a <- sample(letters[1:5],100,replace=T) b <-

Hi, I'm trying to get Rmysql to work o windows server 2008 64-bit. I have the latest build of mysql installed (mysql-5.1.34-winx64). When trying to load Rmysql, I got a warning that Rmysql is linking to an old-ish mysql build (5.0.67). I could do some basic stuff (the connection works) but it breaks when trying to read a large table. So I set up to use the buld 5.0.67 that Rmysql likes. 10

Greetings R-Helpers: I am trying to help a Chinese colleague who is experiencing difficulty loading my package. He is running WindowsXP and the Chinese version of R2.8.1. As you can see from his screen-copy (below), my package is successfully unpacked but cannot be loaded because splines balks when attempted to be loaded. Package mh1823 requires package survival, which in turn requires

I'd echo a lot of what has been said about this by the folk who have been making R work so well. One of the main difficulties is that the environment of computations affects relative performance. e.g., what settings did a distro package builder choose. I note that my 3 GHz Dual Core machine running Ubuntu 8.04 gets octave 3.0.0 octave:6> tic; a = a + 1; toc Elapsed time is 0.120027

I am just beginning to use Sweave with Lyx on a Mac (R2.8.1). I have 12 chunks of Sweave code that work fine, but this piece: <<>>= library(car)

Hi Uwe and all, Error message was: error in normalizePath(path) : path[1]: no such file to load Many thanks, Odette On Fri, Jan 23, 2009 at 1:22 AM, Uwe Ligges <ligges@statistik.tu-dortmund.de > wrote: > > > Odette Gaston wrote: > >> Hi folks, >> >> I am currently having the problem with using R 2.8.1 that I cannot install >> some of packages from

Full_Name: Nicolas Delhomme Version: 2.9.0 OS: Linux CentOS release 5.3 kernel 2.6.18-128.el5 arch x86_64 Submission from: (NULL) (194.94.44.4) Hi, The commands I used to compile R2.9.0 on CentOS ./compile --with-x=no make This fails with the following message: make[2]: Leaving directory `/home/delhomme/R-2.9.0/src/modules/vfonts' make[1]: Leaving directory