similar to: Dynamic linking to binary code from other packages??

Hello, I am having an issue with R CMD check with the nightly build of RC 2.3.0 (listed in the subject.) The problem is this warning: * checking if this is a source package ... WARNING Subdirectory 'src' contains: README _Makefile These are unlikely file names for src files. In fact, they are not source files, but I do not see any reason why they cannot be there, or why I need to

Hi, does someone else get this error message: Error in function (env) : could not find function "finalize"? I get an error when running examples in R CMD check (v2.6.0; session info below): > ### * invertMap > > flush(stderr()); flush(stdout()) > ### Name: invertMap > ### Title: Inverts a read or a write map > ### Aliases: invertMap > ### Keywords: file IO

hi i have a huge matrix and want to split it into 2. with the command %%2. but i get this warning message: *"Error in mmat%%2 : non-numeric argument to binary operator*" here's the bit from my matrix: V1 V2 [1,] "Affymetrix:CompositeSequence:ATH1-121501:244901_at" "2.653" [2,]

I don't know if this is the correct forum to ask the following question; however, when I search the aroma.affymetrix discussion group, it suggested that I should posted the question to r-help. Here it goes. I followed the instructions on aroma.affymetrix trying to install the packages; following are the steps: > install.packages(c("R.oo", "R.utils"),

Hi, List, Sorry in advance if this turns out to be a stupid question -- I've been trying to work it out for awhile, and I don't have any new ideas -- I'm very new to R documentation/ LATEX. I am running "R CMD check " on a package that I am trying to write; the only warning is: * checking for missing documentation entries ... WARNING Undocumented data sets: Einter KG All

Hi, Is there a way to turn off the automatic inclusion of "./" at the beginning of a path specified in an \SweaveInput{} instruction? I'd like to create some reusable "template modules" of Sweave code and put them in a standard directory like /Resources/Affymetrix Then the corresponding file that uses one of these would include a command like

Hi, for 'affxparser' (Bioconductor), we needed a function to test if a certain package was loaded or not, but we did not want to load it if it wasn't, which is why we couldn't use require(). We came up with the following solution: isPackageLoaded <- function(package, version=NULL, ...) { s <- search(); if (is.null(version)) { s <-

During installation of a package, Makevars/Makefile in src/ is processed. I've always considered the purpose of this for compiling native code. Is that it's solely purpose, or is it alright to use it also for non-code compilation purposes, e.g. building inst/ subdirectories on the fly? If not, are there other means to create non-static inst/ subdirectories during installation? The

Is there any package that allow you to perform "MA plot" like graph for Toray microarray data? Unlike Affymetrix CEL file which contain 2 values (R and G), Torray raw data only contain 1 value. MA-plot is Affymetrix specific which usually available for in (limma) package. P. Dubois [[alternative HTML version deleted]]

Hi, afaics in manuals the llvm-{link,ld} tools only can merge bitcode files into one bigger piece which looks like a static-linking from the c/c++ world. i'm wondering is it any possibility to link bitcode elements dynamically in the same way as e.g. c#/msil assemblies? static linking into one executable looks horrible - any change in library used in project forces relinking of everything.

For what it's worth, with R --no-init-file CMD check --as-cran ${pkg}_${version}.tar.gz on R version 2.15.0 alpha (2012-03-03 r58572) on Windows I just managed to generate a crash: Checking package affxparser... * using log directory 'X:/affxparser,BioC-devel/R2.15.0/affxparser.Rcheck' * using R version 2.15.0 alpha (2012-03-03 r58572) * using platform: x86_64-pc-mingw32 (64-bit)

Hi, I'm trying to transition from the JIT to MCJIT. The requirements are fast response time and dynamic unloading/replacement of modified functions. Lazy evaluation is *not* required: I expect all functions to be present at runtime or else an error is fine. With the JIT it's quite simple to unload and replace functions due to the stubs (JMP instructions) that redirect the actual function

Just to close the thread. The problem was that I was using an old version of the code. If anyone has the same problem, you can download the code from here: http://www.thetechguide.com/howto/asterisk/bluetoothfiles.tar.gz Good luck, Danko ----- Original Message ----- From: "Danko Miocevic" <danko@santirso.com.ar> To: "Asterisk

Hi, All, I am getting some funny results trying to use R's built in distribution functions. In R: > dgamma(4.775972,1.37697964405418, 0.106516604930466) [1] 0.05585295 > dgamma(4.775972,1.37697964405418, 0.106516604930466,TRUE) ### THIS IS JUST WRONG! [1] 0.01710129 > log(dgamma(4.775972,1.37697964405418, 0.106516604930466)) [1] -2.885033 > In C:

Dear All, There is a question I met when using Affy package in Bioconductor. I asked it in BioC and didn't get any responses. Sorry to post again: Could anyone tell me how to draw a deep-blue Affymetrix image through Image() function in Affy package? The default settings of image() draw me a black-white image and if I modify it to 256 colors, I get a somehow yellowish image. The reason

Hi, I have 15 CEL files of Affymetrix platform from GEO. Title of experiment is : Ecoli_ASv2 Affymetrix E. coli Antisense Genome Array. I am looking for the package available in R for this array for annotation. I have already tried doing annotation from packages like org.EcK12.eg.db but I don't got the success. Is any other package in the form of database available for E.coli for

Sure, that makes a lot of sense. The implementation details may get tricky, of course, but the concept is great. -Jim On Oct 30, 2013, at 12:20 PM, Yaron Keren <yaron.keren at gmail.com> wrote: > Hi, > > I'm trying to transition from the JIT to MCJIT. The requirements are fast response time and dynamic unloading/replacement of modified functions. Lazy evaluation is *not*

Where can I get some asterisk books.. or tutorials..? I?ve been searching in google.. but I find just some tutorials explaining how to fast set up an asterisk server. I want to learn how to use it and how to make my own configurations. So, the thing is that I want to know what is the best book or tutorial that you know? recomendations? Thanks to everyone... Danko Miocevic

On Saturday 11 of February 2012 14:29:10 Paweł Sikora wrote: > Hi, > > afaics in manuals the llvm-{link,ld} tools only can merge bitcode files > into one bigger piece which looks like a static-linking from the c/c++ world. > i'm wondering is it any possibility to link bitcode elements dynamically > in the same way as e.g. c#/msil assemblies? static linking into one

Hello, I?m trying to use my phone with asterisk to get GSM connectivity but I can?t compile the code. I got the asterisk, chan_bluetooth, zaptel and libpri sources, the last two ones compiled perfectly. I have added this to the /usr/src/asterisk/channels/Makefile: include /usr/src/chan_bluetooth/Makefile and I?ve also added chan_bluetooth.so to the CHANNEL_LIBS var. When I do "make