similar to: \S4method in combination with "[" and "[<-"

R-devel, I'm interested in looking at some examples of existing R packages that rely heavily on S4 classes to get a feel for varying styles and package organization techniques. Could you recommend any packages that might serve as a good starting point? Thanks in advance, Jeff

R-devel, I'm interested in looking at some examples of existing R packages that rely heavily on S4 classes to get a feel for varying styles and package organization techniques. Could you recommend any packages that might serve as a good starting point? Thanks in advance, Jeff

Hi, this is perhaps not so much an issue, but as you are currently working on the Rd parser anyway... When you want to document specific S4 methods for an S4 generic by \S4method{} within a \usage{} environment, and the second (signature_list) argument is "long", be it because you use multiple dispatch, be it because you use long class-names, (or both), one would probably like to be

Hi everyone, I am new to R, but it's really great and helped me a lot! But now I have 2 questions. It would be great, if someone can help me: 1. I want to integrate a normal distribution, given a median and sd. The integrate function works great BUT the first argument has to be a function so I do integrate(dnorm,0,1) and it works with standard m. and sd. But I have the m and sd given.

Using the heatmap.2 function, I am trying to generate a heatmap of a 2 column x 500 row matrix of numeric values. I would like the 1st column of the matrix sorted from the highest to the lowest values - so that the colors reflected in the first column of the heatmap (top to bottom) go from red to green. After sorting the matrix (z), I tried the following command, but the data remains

After some reorganization, we would like to announce the availability on CRAN of a new version (1.6) of our package "distr" as well as the availabilty on CRAN of the new packages "distrEx", "distrSim", "distrTEst", "RandVar". ----------------------------------------------------------------------------------------- Changes from 1.5 to 1.6 -[former

After some reorganization, we would like to announce the availability on CRAN of a new version (1.6) of our package "distr" as well as the availabilty on CRAN of the new packages "distrEx", "distrSim", "distrTEst", "RandVar". ----------------------------------------------------------------------------------------- Changes from 1.5 to 1.6 -[former

Hello, I am using R 2.11.0. I have a curious problem where I get a warning in R CMD check which is seemingly not relevant to my Rd file. The warning says : * checking Rd \usage sections ... WARNING Bad \usage lines found in documentation object 'enrichmentCalc': <unescaped bksl>S4method{enrichmentCalc}{GenomeDataList, BSgenome}(rs, organism, seqLen=NULL, ...) <unescaped

Hello, I am using R 2.11.0. I have a curious problem where I get a warning in R CMD check which is seemingly not relevant to my Rd file. The warning says : * checking Rd \usage sections ... WARNING Bad \usage lines found in documentation object 'enrichmentCalc': <unescaped bksl>S4method{enrichmentCalc}{GenomeDataList, BSgenome}(rs, organism, seqLen=NULL, ...) <unescaped

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

The default initialization for slots of class "factor" and "data.frame" gives NULL. This seems odd, since those slots can't ever be set to NULL by the user. I would expect zero-length instances of factor and data.frame. Here is an example: setClass("FOO", representation(a="factor", b="data.frame", c="numeric")) [1] "FOO"

Hello, in a Rnw-file I have this used stuff to try out tex-results... ============================== <<>>>= texme <- function() cat( "{\\bf Hallo, das ist voll fett!}\n" ) @ <<results="verbatim">>= texme() @ ============================== I used this command: "R CMD Sweave example.Rnw" and got this error:

Given S4 methods [ and [<-, how do I write the Rd-file usage clause for the latter one? What I have now is: \S4method{[}{TimeSeries,TimeDate,missing}(x, i, j, ..., drop) \S4method{[<-}{TimeSeries,TimeDate,missing,ANY}(x, i, j, ..., value) which results in the following output: ## S4 method for signature 'TimeSeries, TimeDate, missing': x[i, j, ..., drop]

Is there any R function that computes the convolution of the double exponential distribution? If not, is there a good way to integrate ((q+x)^n)*exp(-2x) over x from 0 to Inf for any value of q and for any positive integer n? I need to perform the integration within a function with q and n as arguments. The function integrate() is giving me this message: "evaluation of function gave a

Hi all, Other than: http://www.stamats.de/F2006.r Are there other good simple examples out there of using the ROptRegTS package (part of the RobASt project)? I'm hoping to plug it in for multivariate regression. Or is this not a good idea? Just trying to find out how it compares to rlm, lts, glm, etc. Hopefully this makes sense, I'm new to the world of statistics and R. Thanks! St0x

Dear Developers, I'm updating my R installation via svn (currently: Revision 44626). For some time now (sorry don't know the exact revision number) make for R devel yields the following error make[4]: *** Keine Regel vorhanden, um das Target ?../../../src/include/R_ext/GraphicsBase.h?, ben?tigt von ?g_fontdb.o?, zu erstellen. Schluss. (translation: no rule to make target ...

Has anyone implemented Tibrishani's gap statistic in R or S plus? If so I would greatly appreciate the relevant script file. Any help will be much appreciated Kind regards Dr Graham Leask Economics and Strategy Group Aston Business School Aston University Aston Triangle Birmingham B4 7ET Tel: Direct line 0121 204 3150 email g.leask@aston.ac.uk [[alternative HTML version deleted]]

Hello, Given a probability function: p(x) = 12 / (25(x+1)) , x=0, 1, 2, 3 we generate the following values: C1 C2 0 0.48 1 0.24 2 0.16 3 0.12 Now, I'm supposed to create 50 random values using this table. In MiniTab, I simply selected Calc -> Random Data -> Discrete, and selected the columns, and it created 50 random values in a new column.[1] How do I do the

Doese anyone know a R function to find the median of a gamma distribution? [[alternative HTML version deleted]]

Dear R Developers, the new simplify argument in apply causes that my package (hsdar) does not pass the checks in R-devel. The workaround, Kurt Hornik send me, is working for the R-code: if("simplify" %in% names(formals(base::apply))) do something else do something else Unfortunately, I cannot conditionalize the man pages of the functions. I get the message that