similar to: plot(x) in 2.7.0 (with y=NULL) proposed code correction

Hi all, As long as I've used R, add=TRUE hasn't worked in contexts like this: f <- function(x) x^2 X <- seq(0, 1, by=1/4) plot(f, col="blue") plot(X, f(X), col="red", type="l", add=TRUE) I attached a fix for version 2.6.2. Cheers, Andrew -------------- next part -------------- diff --git a/src/library/graphics/R/plot.R

As I haven't got any replies to my earlier posts about incorrect tick positions in plot and matplot, here is the simplest patch to correct this issue (it fixes both plot with xlim/ylim and matplot). The plot.R was unchanged between 2.7 and current R-devel. It would be great if the patch could be (tested and) applied to both the current patched and the current devel versions. 70,71c70,71 <

Full_Name: Richard Calaway Version: 2.9.2 OS: Mac OS X 10.5.3 Submission from: (NULL) (65.47.30.18) Here's my sessionInfo(): > sessionInfo() R version 2.9.2 (2009-08-24) i386-apple-darwin8.11.1 locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Currently, if you pass a list

The behaviour of the plot function when used with xlim/ylim and the matplot function as in the following simple example changed between R2.6.1 and 2.7.0+ producing ugly plots in the new versions. In case of plot it looks like the pretty function is called with wrong arguments (i.e. range of supplied data rather than values of xlim and ylim): m = matrix(c(-0.033, 0.009, 0.064, 0.050, 0.097,

Hi, Here are a few errors I found as well as a few comments. 1) In the man page of par: lty: The line type. Line types can either be specified as an integer (0=blank, 1=solid, 2=dashed, 3=dot- ted, 4=dotdash, 5=longdash, 6=twodash) or as one of the character strings `"blank"', `"solid"',

Hi! How to find out which plot function is used when i call plot(hist.default(1:10,plot=F)) and all works fine ? The reason why I would like to know it is that after loading some self written R functions > plot(hist.default(1:10,plot=F)) Error in xy.coords(x, y, xlabel, ylabel, log) : x and y lengths differ > traceback() 5: stop("x and y lengths differ") 4: xy.coords(x, y,

I have a need to build a time series and there are a couple of aspects about the time series object that are confusing me. First it seems that ts.union is not doing what I would expect. For example: x0 <- rep(0,10) x1 <- rep(1,10) xt0 <- ts(x0, frequency=10) xt1 <- ts(x1, frequency=10) st2 <- ts.union(xt0, xt1) > xt2 Time Series: Start = c(1, 1) End = c(1, 10) Frequency = 10

I am currently trying to use R to construct a regression model to explain output based on temperature. I have combined my output and temp data into a notepad file. there is no problem with loading the data into R. > data.df output temp 1 850 17 2 849 17 3 905 17 4 925 17 5 1043 19 6 1104 20 7 1097 18 8 979 19 9 926 18 10 1133 18 ~~ ~~ 240 1124

I'm having trouble getting fun="cloglog" to work with plot on a survfit object. Here are the data I used for the commands that follow. days status 2 0 2 0 5 1 9 0 14 1 16 0 16 0 17 0 29 1 30 0 37 1 37 0 39 1 44 0 44 0 58 0 60 1 67 1 68 1 82 1 82 1 86 0 86 0 89 1 93 0 97 1 100 0 100 0 100 0 > library(survival) Loading required package: splines > eg1.km <-

Hi, I am new to R. I am trying to figure out how to graph expression data from the TCGA database. If I understand correctly the expression data I have downloaded is from a microarray using the AgilentG4502A. I've had trouble reading into R in the level I, level II, and the gene expression analysis data using >dat<-read.table("C:\\file.txt", header=T, row.names=1) for

termplot() does not carry subsetting over to carriers that are in the environment but not in the data frame. This generates a "subscript out of bounds" error. > data(ToothGrowth) > logdose <- log(ToothGrowth$dose) > tooth.lm <- lm(len ~ logdose, data=ToothGrowth) > termplot(tooth.lm) ## Works fine > toothVC2.lm <- lm(len ~ poly(dose,2),

Following my previous post on S3 method despatch, I put debug messages in the code of Axis, Axis.default and plot.default in graphics/R/axis.R and graphics/R/plot.R to print the class of x, at and y on plot. After recompiling R, what I see is that x *lost* its class attribute (at least for classes not known to 'graphics') in Axis, called directly from plot.default and this could be the

Good day all, I'm trying to plot a continuous line plot, which is followed by two forecast points eg. one forecast point is 12 months out, and another 24 months out from the last date of the line plot. In my attempts so far, the second plot (the forecast points) is scaled against a new axis scale, thus the two plots are not directly comparable (I need the forecast points to be scaled

HI, sorry but i don't understand how to make a function with as.function() formula<-"2+3*x" formu<-as.symbol(formula) > formu 2+3*x formul<-as.function(alist(x=,formu)) curve(formul,1,5,col="blue") Error in xy.coords(x, y, xlabel, ylabel, log) : x and y lengths differ > typeof(formul) [1] "closure" and not plot the curve function, Why?

Hi i want do a line graph. My y axis contains numeric values. My x axis contains non numeric statements. This is what i want the graph to look like. When i try to plot this graph on R it comes up with the following error message: "Error in plot.window(...) : need finite 'xlim' values In addition: Warning messages: 1: In xy.coords(x, y, xlabel, ylabel, log) : NAs introduced by

A table without names displays like a vector: > unname(table(2:3)) [1] 1 1 1 and preserves the table class (as with unname in general): > dput(unname(table(2:3))) structure(c(1L, 1L), .Dim = 2L, class = "table") Does that make sense? R is not consistent in its treatment of such unname'd tables: In plot, they are considered erroneous input: >

Hello, I am hoping for some advice regarding warning/error messages I received when running a Cox regression # message 1 - obtained while creating a plot of residuals > plot (NV.zph, main = "groupNUSM - UNFIT", var= 'groupNUSM') Warning messages: 1: In approx(xx, xtime, seq(min(xx), max(xx), length.out = 17)[2 * : collapsing to unique 'x' values 2: In

I am trying to plot survival curves using the following code as an example: >rs1799964.coxph<-(coxph(Surv(sassurvmonths,status)~age+stage+rs1799964_TNFA,method="efron")) >plot(rs1799964.coxph,lyt=c(1,3),xlab="Survival in Months",ylab="Proportion Surviving") I am gettingthe following error message: >Error in xy.coords(x, y, xlabel, ylabel, log) :

x <- c(6.6493705109108, 7.1348436721241, 8.76886994525624, 6.12907548096037, 6.88379118678109, 7.17841879427688, 7.90737237492867, 7.1207373264833, 7.82949407630692, 6.90411547316105) plot(ecdf(x), log="x") It does the plot fine, but complains: Warning message: In xy.coords(x, y, xlabel, ylabel, log) : 1 x value <= 0 omitted from logarithmic

Is there any way to use more than one color or shape in the same plot. I would like to make the points different colors for various levels of a variable. I have tried a simple 'if' statement in the plot command, but I get an error message. Here is what I have tried and the error message I get: > plot(test, if(test[,1]<8) col="steelblue2" else col="wheat2")Error