similar to: package installation order

I would like to turn off all the messages during library(aPackage) or require(aPackage) I tried different commands: invisible, capture.output, sink but none of them is working. For example, loading VGAM, gives a lot of unnecessary messages: > library(VGAM) Attaching package: 'VGAM' The following object(s) are masked from package:splines : bs The

Hello, I want to use expresso for preprocessing the hgu133a-spikein data from affycompII. But there is an error: > library(affy) > path <- "z:/Microarray/hgu133a-spikein/rawdata" > celFile <- list.celfiles(path=path,full.names=TRUE); > affyBatch <- ReadAffy(filenames=celFile[1:6]); > eset1 <-

Hi, Recently I try to install Biobase component using the tutorials from cran.r-project.org/doc/Rnews/Rnews_2006-5.pdf I tried u <- "http://bioconductor.org/biocLite.R" > source(u) > biocLite("pkgDepTools", dependencies=TRUE) Running biocinstall version 2.0.8 with R version 2.5.1 Your version of R requires version 2.0 of Bioconductor. Warning in

Hi, I am trying to install the package exonmap and RMySQL however I keep getting the following error: "Error in library(pkg, character.only = TRUE) : 'RMySQL' is not a valid package -- installed < 2.0.0?" I have R version 2.4.1 so I know its not a version issue. I deleted and reinstalled the folders again and the same thing happened. Has anyone any ideas? Thanks,

I have a very simple setup here that I have recently made some modifications to and it has affected my ability to save files to the linux samba server. The recent changes are: converted all fs's to xfs from ext3. Upgraded to latest kernel 2.6.7 from a 2.4 kernel. Samba used to work fine. Now, I can copy files out of my linux samba server to my windows machine at full speed. However, when

Hi, I am hoping someone can help me with a sampling question. I am using the following function to sample 10 unique observations: x <- sample(1:100, 10, replace=F) Given the first 10 observations, I need to sample another 5 unique observations from the remainder. I essentially want to do a Monte Carlo type analysis on the results. I would appreciate any feedback. Thanks -- View this

Is there a painless way to find the names of all packages on CRAN that "Depend" on a specified package? url: www.econ.uiuc.edu/~roger Roger Koenker email rkoenker at uiuc.edu Department of Economics vox: 217-333-4558 University of Illinois fax: 217-244-6678 Champaign, IL 61820

Is there a way, maybe using Duncan TL's RCurl, to efficiently test whether an URL such as http://$CRAN/src/contrib/ has changed? I.e. one way is via a test of a page in that directory as per (sorry about the long line, and this would be on Linux with links and awk installed) > strptime(system("links -width 160 -dump http://cran.r-project.org/src/contrib/ | awk

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is

I just downloaded R-devel and when loaded it immediately segfaults. I'm not sure how much or what sort of diagnostic info and can provide, but below is my build script, my console output, and the output of uname -r. I am currently dependent on the development version of a package, so I'd like to get R-devel up and running if possible. I am sure there is more info I can provide, but before

On 16.04.2015 20:32, Timo Sirainen wrote: > On 16 Apr 2015, at 19:22, Dennis Kuhn <d.kuhn at heinlein-support.de> wrote: >> >> i can't delete several folders at once. I have a folder structure like >> folder1/folder2/folder3 (we use slash as hierarchy separator). When i >> delete folder1 server1 executes the command correctly >> >> >> Apr 16

i can't delete several folders at once. I have a folder structure like folder1/folder2/folder3 (we use slash as hierarchy separator). When i delete folder1 server1 executes the command correctly Apr 16 13:44:28 server1 dovecot: imap(d.kuhn at heinlein-support.de): Mailbox deleted: INBOX/Trash/folder1/folder2/folder3 Apr 16 13:44:28 server1 dovecot: imap(d.kuhn at heinlein-support.de):

Hi everybody, I have to recognize that my post certainly shows my lack of skills in really navigating the R web page .... i am surprised that only one or two persons wrote me about the "Task Views" - it is what i was after - although maybe too general for my lazy taste - but hei - it is there and certainly makes my life easier. So - Thank you John and Gabor and Roger for pointing this

Neither biocLite nor the GUI menus can install packages on my system. Here is relevant output: > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 11.1 year 2010 month 05 day 31 svn rev 52157 language R version.string R version 2.11.1 (2010-05-31) > source("http://bioconductor.org/biocLite.R") BioC_mirror =

Full_Name: Colin A. Smith Version: 1.8.0 OS: Mac OS X 10.2.6 Submission from: (NULL) (216.102.90.18) Both Biobase and my package annaffy use S4 classes to define methods for "[". Both packages use the save image method of installation. (See annaffy 1.0.3 in BioC CVS.) Depending on how both packages are loaded, the Biobase definitions seem to be getting masked out: >

Dear ALL I want to load "HTSanalyzeR", It 's necessary to load "igraph" package. This time I see this error: library(igraph) library(HTSanalyzeR) Loading required package: GSEABase Loading required package: Biobase Error: package 'Biobase' is not installed for 'arch=i386' > I 'll be glade if you help me [[alternative HTML version deleted]]

Hi Everybody, I am having a problem with loading Biobase package. I typed 2 lines below at R prompt > source ("http://boconductor.org/biocLite.R") > biocLite (lib="/usr/local/lib/R/library") which attempted to install a bunch of packages with varying degree of success. Out of 29, 13 failed. Biobase is one of them. As a matter of fact, when I looked at logs, most

I'm seeing weird issues in methods initialization, i.e. loading marrayClasses loads Biobase, and when explicitly done, as in library(Biobase) library(marrayClasses) is fine, but when Biobase is loaded via a require statement in marrayClasses' .First.Lib, I end up with: Warning message: In the method signature for function "coerce", class "exprSet" has no

We are trying to setup a Windows server that will allow any of our users to build a binary R package given a source package. The idea is to have a central R installation and allow users to install packages to their own package library for the purposes of binary package building. It seems, however, that write access to $R_HOME is required as part of the install step even when -l is used to

Hello All R-Gurus: ISSUE: Cannot view R vignettes due in Ubuntu Linux (a debian variant). note: this issue has been posted to this list before with no responses given see https://stat.ethz.ch/pipermail/r-help/2007-September/141178.html DETAILS: I am trying to view an R vignette. Here is the situation: I issue the openvignette(), then select the vignette I wish to view...and the system returns: