similar to: Error building R-alpha (from 28-Mar-07, r40918)

I have a peculiar problem that I'm sure is a simple one, but I can't figure out what my mistake is. Can someone enlighten me? I have a simple file, class.R: ## setClass("abc",representation(a = "character", b = "ANY")) I have a package directory ExpressCGH1 made with package.skeleton. The package happily builds and installs, but R CMD check fails with

I am running R-1.81, apple's JVM installed with OS 10.3.2, and installed Sjava-0.65.X (a patched version of Sjava for MacOS from Simon Urbanek, which I know is inherently dangerous, but...). This version installed fine and some aspects seem to work as expected. However, this is one of the examples and causes R to hang. Any insights? What other information should I provide to make it easier

This is a rather obscure question, I realize. I have written to the package author but have not heard back as of yet. I have read the README in the package, as well, but it didn't give me enough detail to diagnose the problems that I am having. (I did edit out the LAM-MPI check in zzz.R.in.) I am working to install Rmpi on top of MPICH on a beowulf cluster. Below is the output of the

I am still having some difficulties with connecting R to a C++ function. I am able to call the function as expected after compiling the shared library and such. However, the call to the function is via .C; parameters from the .C call are not being passed correctly to the function. As an example, I have attached a GDB run of the code. I set a breakpoint on entry to the function I am calling

R 2.1.0/src/include from 2005/04/18 download Naming inconsistent for guards as well but that's pedantic. Simple convention: file <foo.h> #ifndef R_FOO_H file <R_ext/bar.h> #ifndef R_EXT_BAR_H Missing guards: <IOStuff.h> <Internal.h> <Parse.h> <R_ext/GraphicsBase.h> <R_ext/GraphicsDevice.h> <R_ext/GraphicsEngine.h>

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I am trying to create a PXE setup with floppy images for all needed utilities - for example, BIOS flash for various motherboards, disk diagnostic tools, memtest86+, etc. I've gotten memtest86+ to work (using the .bin), and some of the disk images work - however, some disk images will not boot. All of the images were pulled from working, bootable

Hi, I want to use R_qsort_int_I() in my C function, but getting the following error. It looks like there is a conflict between Rmath.h, which I use to generate random numbers, and R_ext/Boolean.h I would appreciate any help to fix this problem. gcc -ansi -g -o Gibbs gibbs.c subroutines.o rand.o vector.o -lm -lRmath -llapack -lblas -lfrtbegin -lg2c -lm -shared-libgcc In file included from

Dear all, I have an error message installing SJava package. So I searched web site(google) and R-mailing list to find a similar error message. But I couldn't find it. I installed R-2.1.1 like this on Fedora Core4 1) /configure --enable-R-shlib --with-libpng --with-jpeglib 2) make -> make check -> make install and then issuing on shell prompt (red lines are error messages) R CMD

Hi list, To call C, I used to use R-extension in windows but I'm moving to unix system because my PC doesn't have enough memory. My C codes requires to include the following header files: #include <stdlib.h> #include <R.h> #include <Rdefines.h> #include <Rmath.h> #include <R_ext/Applic.h> #include <R_ext/PrtUtil.h> In windows, I had no problem with it

Hi, I installed SJava 0.66-1 on my linux RH 7.2 machine. I am using R-1.7.1. I set LD_LIBRARY_PATH up then called library(SJava) and it was fine. But when I called .JavaInit(), I got weird error that states it could not find java/lang/Hashtable. The session is below and shows my java configuration. I am using j2sdk1.4.2_01 from Sun. Thank you very much. Weiming Zhang > .javaConfig

I would like to compile for Windows a rather simple R package that contains some C code. It does not contain any Fortran code. I tried the cross-compilation route using the pre-built set of tools from http://www.devolution.com/~slouken/SDL/Xmingw32/, as described in $R_SRC/src/gnuwin32/INSTALL Using the sources in r-devel from the rsync site I am able to build libR.a in src/gnuwin32 but I

Colleagues, How i can solve this error when i install SJava package Thanks ---------------- R CMD INSTALL -c /usr/local/lib/R/SJava_0.69-0.tar.gz * installing to library ?/usr/local/lib/R/site-library? * installing *source* package ?SJava? ... checking for java... /usr/lib/jvm/java-6-sun/bin/java Java VM /usr/lib/jvm/java-6-sun/bin/java checking for javah... /usr/lib/jvm/java-6-sun/bin/javah

Hi Ivan Can you please clarify what input files should be used with your proposed function? I tried a few files in r-svn/src/include and one of them gave me an error. > getdecl("~/R/r-svn/src/include/R.h") [1] "R_FlushConsole" "R_ProcessEvents" "R_WaitEvent" > getdecl("~/R/r-svn/src/include/Rdefines.h") Error in regmatches(lines,

Hey, I have a question about including the R framework in a file. I'm running OS X 10.5.2. When I attempt to use: #include <R/R.h> And compile I get the following error: /Library/Frameworks/R.framework/Headers/R.h:40:21: error: Rconfig.h: No such file or directory /Library/Frameworks/R.framework/Headers/R.h:41:57: error: R_ext/ Arith.h: No such file or directory

hey, I am running R 2.0.1 on a the terminal of my MAC OS X and I have written some C code that I would like to use dynload to bring into R. When I try to compile the code i get the error R.defines.h no such file or directory. I know that the file is in resources/include but where do I have to move the file to so that the compiler can access it? I tried copying Rdefines.h and R_ext folders

Dear Group Members, First of all thanks for all the great work and effort. I am trying to compile a part of the Project R, 'pnorm.c' in visual studio 6.0 c++ language. First i downloaded the standalone R-2.11.0 and tried to compile it. Some files were missing here such as 'Rconfig.h'. Then i downloaded the Binary for Windows, and in the installation folder i found those missing

Hello, The package builds successfully on RHEL5 and OS X( 64 bit,32/64 respectively) but on FC4(32 bit) it fails with this error g++ -m32 -I/usr/include/R -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -I. -g `pkg-config --cflags protobuf` -Wall -c

Hi, I am working on a UNIX machine and I am interfacing R and C with the .C function. I am trying to call LAPACK and BLAS routines, but am running into a problem where, while I am able to run the BLAS routines, I cannot run the LAPACK routines. I compile my .c file (at end of email) in the following way: [mhitczen at jlogin2 ~/Cstuff]$ R CMD SHLIB testmore.c gcc -std=gnu99

Hi, I'm using dyn.load to load a shared library (compiled from C code) into R. If I dyn.unload it and then dyn.load it again, I get an hourglass icon in Rgui (R 1.7.0, Win 2000), and it just sits there forever. I can't press Escape to stop the current computation, but I can close Rgui without resorting to using the Task Manager. Is it a problem with my use of R_alloc? Do I need

Michael, Thanks for reaching out. This was brought up by Romaine Francois offline to me as well. What he does as a workaround is #define class klass extern "C" { #include <R_ext/Altrep.h> } #undef class While we consider changing Altrep.h, the above should work for you in the immediate term. Let me know if it doesn't. ~G On Mon, Oct 8, 2018 at 4:17 PM, Michael