similar to: Failing to install R-2.4.0 on FC4

Hi everyone, I downloaded the source code available at: http://cran.fhcrc.org/src/base/R-2/R-2.4.0.tar.gz to a linux machine (Linux 2.6.11-1.1369_FC4smp #1 SMP). I successfully configured and compiled it, which means I'm able to run it from the R-2.4.0/bin directory. I want to do a system wide installation (via 'sudo make install') and help2man fails, ie, when I execute the

Hi everyone, say I have a function called 'foo', which takes the argument arg1. Is there any mechanism that I can use to "learn" about the variable where foo(arg1) is going to be stored? For example: x <- foo(arg1) so, inside foo() I'd like to be able to get the string "x". if, foo(arg1) was used insted, I'd like to get NA. thank you very much, b

I think that you misunderstood me. As far as I know, RMA does three things: background correction, quantile normalization, and summary from probes to probesets. I want the probe values after background correction and quantile normalization but before the summary. On Sat, Dec 26, 2009 at 12:07 PM, Benilton Carvalho <bcarvalh at jhsph.edu> wrote: > pm(data) > > b > > On Dec

Hi everyone, I have 2 environments (2 different R sessions) as described below: Session 1: Name of the environment: "CrlmmInfo" Objects in the environment: index1: logical index - length 238304 index2: logical index - length 238304 priors: list of 4 - (matrix 6x6, 2 vectors of length 6, vector of length 2) - all num params: list of 4: centers [238304 x 3 x

Hi everyone, I have 2 environments (2 different R sessions) as described below: Session 1: Name of the environment: "CrlmmInfo" Objects in the environment: index1: logical index - length 238304 index2: logical index - length 238304 priors: list of 4 - (matrix 6x6, 2 vectors of length 6, vector of length 2) - all num params: list of 4: centers [238304 x 3 x

I'm trying to build from the latest SVN sources on Mac OS X 10.4.3 and I seem to be having a problem making the documentation. When I do make install, i get the following: (sly at gigondas):~/src/R/r-devel/build-f95$ make install make[1]: Nothing to be done for `front-matter'. SVN-REVISION is unchanged make[1]: Nothing to be done for `install'. make[1]: Nothing to be done for

Hi everyone, sorry if this was discussed before (and in this situation, could you please point me to the discussion in the archive? My search didn't seem to be effective). Is there a way of getting the names of objects in a .rda file without having to load it? Thank you very much, benilton -- PhD Candidate Department of Biostatistics Bloomberg School of Public Health Johns Hopkins

Hello, When doing "make install" under any port, I get *** Error code 1 after the "Checking if *** already installed" (see below for help2man as an example). This error seems to occur with any port, such as apg (/usr/ports/security/apg). The tarball are fetched from Internet. I think this is due to the difference of version : CVS has RELENG_4_6_2 and 'make

Preamble: I am in no way opposed to Perl in general - I love Perl and probably always will. R currently has Perl as both a build-time and run-time dependency. This adds about 200 Mb, give or take, to the required environment size (as measured in CentOS - looks like it might be a bit smaller in Ubuntu?). Not such a huge deal, really, but the actual benefit R gets from the dependency is quite

Kanru, Thanks for the bugreport. On 11 April 2006 at 22:03, Kanru Chen wrote: | Package: r-base-core | Version: 2.2.1.svn37668-1 | Severity: minor | | In manpage of /usr/bin/R, the first, fourth and last line shows `VERSION' | instead of `R'. | | I believe it is a typo. More likely something is wrong with how R.1 is autogenerated using help2man. Incidentally, that `R --version'

I was trying to work through a PDC problem that I was having with 3.0.23a noted in bug 3964. I didn't know how to apply the offered patch and my distro, FC4, has not offered an update yet to 3.0.23b so I thought that I would revert to a previous version that is not affected by this bug. I forced an install of 3.0.23 samba, common, and client and now rpm reports that I have two versions of

After a fresh install, I noticed that shorewall 2.4.0 wasn''t starting automatically under FC4. The startup script installs properly from the rpm: /etc/rc.d/init.d/shorewall ... but the post install "/sbin/chkconfig --add shorewall" produces this in the runlevel symlink directories: /etc/rc.d/rc5.d/S-1shorewall /etc/rc.d/rc0.d/K-1shorewall /etc/rc.d/rc6.d/K-1shorewall

Hi, I used to have a working Samba + Winbind configuration in ADS mode under FC4; Samba version was 3.0.14a-2. I joined a W2k domain, and winbind correctly returned the user information. krb5.conf and smb.cong have been modified according to Howtos and tutorials found on the net. One day Samba has been updated to 3.0.23a-1.fc4.1 and it stopped working. No modification has been done to the

Hi Everyone, I want to generate some random numbers according to some empirical distribution. Therefore I am looking for the inverse of an empirical cumulative distribution function. I haven't found any in R. Can anyone give a pointer? Thanks, Geoffrey _______________________________________________________=0A= =0A= =0A= The information in this email or in any file attached

Hi Everyone, when building (say) R-2.4.0 from the source, is it still the recommendation to use GCC 3.4? Thank you very much, Benilton Carvalho PhD Candidate Department of Biostatistics Johns Hopkins University

Hello, whenever I try to copy a new file from windowsXP (2K also) to a samba share which is NFS mounted on the samba server, I get an error on the client: "impossible to copy file.txt: the process cannot access the file because an other process has locked a part of it" (my english translation of the french message I have !) It worked fine before (3weeks ago) and I think that problem

Hello! I have tried to build and install latest version of R, but I am not able to perform the install, due to seg. fault. I did the following after SVN checkout and wget for recommendeds: ./configure --prefix=/usr/local/R-devel make make install ... ... tcut text html latex example tobin text html latex example

When using nat and the new 2.4.0 providers functionality, the following error is produced on boot with FC4: Cannot open "/proc/sys/net/ipv4/route/flush The box is running the latest update: selinux-policy-targeted-1.23.18-17 >From /var/log/audit/audit.log: type=PATH msg=audit(1120675555.415:78677): item=0 name="/sbin/ip" type=AVC_PATH msg=audit(1120675555.415:78677):

Hi everyone, it's been a while I've been trying to save a plot created via lattice:::xyplot if I have a file tst.R with the following code: y <- rnorm(100) x <- rnorm(100) z <- sample(letters[1:4], 100, rep=T) library(lattice) bitmap("tst.png") xyplot(y~x|z) dev.off() and I source it, I get the tst.png file, which is a blank page. If I copy and paste instead, I

I want to remove the column names from a data frame. I do it the long way, can any body show me a better way ? df= data.frame(chrN= c(“chr1”, “chr2”, “chr3”), start= c(1, 2, 3), end= c(4, 5, 6), score= c(7, 8, 9)) df #I write a txt file without row or column names write.table(df,"df1.txt",sep='\t',quote=FALSE,row.names=F,col.names=F) #then I read it with the header = F