similar to: NA handling in as.character applied to a list

Hi all, One of the things I find most problematic in R is the partial matching of names in lists. Robert and I have discussed this and we believe that having a mechanism that does not do partial matching would be of significant benefit to R programmers. To that end, I have written a patch that modifies the behavior of "[[" as follows: 1. [[ gains an 'exact' argument with

I'm looking for ideas for creating high-quality plots for use in projected presentations (powerpoint, etc) --- ideally high-quality png, jpg, bmp. The graphics produced using the postscript device look very good. Those generated with win.graph(), png are plagued by the jaggy lines. So far, the only way I can use the postscript plots in my presentations is using separate screen capture

Hi, Using latest R 2.5.0 Patched, I'm unable to install the Matrix package from cran.fhcrc.org. I get: Creating a new generic function for "isSymmetric" in "Matrix" Creating a new generic function for "unname" in "Matrix" Error in conformMethod(signature, mnames, fnames, f) : In method for function "!": formal arguments omitted in

promptClass fails to identify methods associated with the class. Here is a fix: Index: promptClass.R =================================================================== --- promptClass.R (revision 41719) +++ promptClass.R (working copy) @@ -165,7 +165,7 @@ if (nmeths > 0) { .meths.body <- " \\describe{" for (i in 1:nmeths) { - .sigmat

Hi all, The dict package provides a dictionary (hashtable) data structure much like R's built-in environment objects, but with the following differences: - The Dict class can be subclassed. - Four different hashing functions are implemented and the user can specify which to use when creating an instance. I'm sending this here as opposed to R-packages because this package will

Hi, On Windows, package files in the inst/ subdir are installed after the lazyload creation. This differs from Linux where inst/ is installed _before_ lazyload creation. Since packages may need data in inst, I think the order on Windows should be changed. Perhaps like this: diff --git a/src/gnuwin32/MakePkg b/src/gnuwin32/MakePkg index 57af321..868e8f1 100644 --- a/src/gnuwin32/MakePkg +++

I've been experimenting with install.packages and it's new ability to track down dependencies from a list of repositories and encountered this: install.packages(c("foo", "bar"), repos="http://cran.r-project.org", dependencies=c("Depends", "Suggests")) dependencies 'foo' are not availabledependencies 'bar'

Hi, namespaceImportFrom in base/R/namespace.R has the following: fdef <- methods:::getGeneric(genName, impenv) The definition of getGeneric is in methods/R/RMethodUtils.R starts with: getGeneric <- ## return the definition of the function named f as a generic. ## ## If there is no definition, throws an error or returns ## NULL according to the value of

Hello all, I've had the following apropos alternative in my ~/.Rprofile for some time, and have found it more useful than the current version. Basically, my version ignores case when searching. If others find this useful, perhaps apropos could be suitably patched (and I'd be willing to create such a patch). + seth Here is my version of apropos: APROPOS <- function (what, where =

Git is a source code management system like CVS, svn, arch, and others. It would be nice to add exclude support to R CMD build and INSTALL so that the .git subdir of an R package is handled appropriately. Here is a possible patch: diff --git a/src/scripts/INSTALL.in b/src/scripts/INSTALL.in index 75da9db..09e5ab5 100644 --- a/src/scripts/INSTALL.in +++ b/src/scripts/INSTALL.in @@ -863,7

Hi, Is there an alternative to type2char that is available for use in package code? It would be useful for producing more informative error messages. + seth

Hi, Reading help("Documentation"), I'm led to believe that a help call like: ?myFun(x, sqrt(wt)) Will search for help on the appropriate method in the case that myFun is generic. This isn't working for me. Here is an example using the Biobase package: ## If Biobase is not installed source("http://bioconductor.org/biocLite.R") biocLite("Biobase")

[R 1.7.1 on Windows XP Pro] Since R allows missing values for character variables, why are NA's not propagated by character manipulation functions? For example: > temp <- c("a", NA) > temp [1] "a" NA > is.na(temp) [1] FALSE TRUE > paste(temp[1], temp[2]) [1] "a NA" > substr(temp, 1, 1) [1] "a" "N" >

Hi, While running R CMD build on one of the Bioc packages, I'm getting the following error message * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files Can't call method "print" on an undefined value at /home/sfalcon/arch/x86_64/R-2.3/bin/build line 646. The pacakge has CRLF line endings in source files. >

I've recently come across two pieces of code using calls to callGeneric() inside the definition of a method. In both cases, it appears to me that the callGeneric call could be replaced with a "real" call to the generic, say foo(x) instead of callGeneric(x) inside method foo. My understanding from the docs is that when called with arguments, it is just like calling the actual

Hi all, I've added a new package 'weaver' to the BioC repository: http://www.bioconductor.org/packages/1.9/bioc/html/weaver.html The weaver package provides extensions to the Sweave utilities included in R's base package. The focus of the extensions is on caching computationally expensive (time consuming) code chunks in Sweave documents. Why would you want to cache code

Hi all, I've added a new package 'weaver' to the BioC repository: http://www.bioconductor.org/packages/1.9/bioc/html/weaver.html The weaver package provides extensions to the Sweave utilities included in R's base package. The focus of the extensions is on caching computationally expensive (time consuming) code chunks in Sweave documents. Why would you want to cache code

I'm trying to follow the example in the R for Windows FAQ on running gdb and am getting stuck because gdb tells me "Cannot access memory at address ...". Here's what my gdb session looks like (This one from a cygwin shell, but same results from plain Windows CMD shell): $ cd R-devel/src/gnuwin32 $ gdb ../../bin/Rgui.exe GNU gdb 5.2.1 Copyright 2002 Free Software Foundation,

Having used JUnit and PyUnit, I was pleased to see the release of the RUnit package on CRAN. I'm wondering if there are any RUnit users out there that would be willing to share some tips on how they organize their code to work with RUnit. Specifically, I'm wondering about the best way to load/import/source the functions to be tested. I would like to end up with a script, testall or some

Hi, In R version 2.4.0 beta (2006-09-24 r39502) I'm seeing the following behavior with the tcltk package: > library("tcltk") Loading Tcl/Tk interface ... done > tkfile.dir() Error: 'tkfile.dir' is defunct. Use 'tclfile.dir' instead. See help("Defunct") > tclfile.dir Error: object "tclfile.dir" not found ## But the function is in the