Displaying 20 results from an estimated 600 matches similar to: "unable to load lapack.so"
2006 Jul 24
1
R and ACML
While I recently received some very helpful files and email from Kevin
Hendricks for compiling with ATLAS, thought I'd first have a stab at
ACML. Having problems, which I suspect are trivial to solve:
1. machine is running RHEL 4, meaning, it uses gcc 3.4.5 out of the box,
and g77. In my experience, over-riding RHEL's choice, and manually
upgrading to gcc 4.x.x (and, as a consequence
2005 Dec 14
1
Building R-devel with ACML
I'm trying to build R-devel with AMD's ACML. I downloaded version 3.0.0
64bit for gfortran (acml-3-0-0-gfortran-64bit.tgz) and copied the
libraries to /usr/local/lib. When I configure R to build against the
ACML library, how do I know if the library has been detected and will be
used?
I run 'configure' with the '--with-blas=-lacml' flag and am using gcc
4.0.2 (with
2004 Mar 25
1
yet another fast BLAS (from AMD this time)
Dear R-devel,
Has anyone played with this?
http://www.amd.com/us-en/Processors/DevelopWithAMD/0,,30_2252_2282,00.html
<http://www.amd.com/us-en/Processors/DevelopWithAMD/0,,30_2252_2282,00.html>
.
I'll probably give it a shot...
Best,
Andy
Andy Liaw, PhD
Biometrics Research PO Box 2000, RY33-300
Merck Research Labs Rahway, NJ 07065
mailto:andy_liaw@merck.com
2008 Jun 13
2
compiling 2.7.0 GNU/Linux | BLAS & Lapack query
Greetings -
For a host of reasons I chose (was forced) to upgrade my multi-Opteron box
from Fedora 7 -> Fedora 8. In the process, I also updated the ACML I had
installed from 4.0.0 to 4.1.0.
While I get no errors (that I can find) in the config -> make -> make
install sequence, I'm pretty sure (based on some benchmarks) that I'm not
getting BLAS and/or Lapack to compile in. So,
2006 Mar 28
2
R 2.3.0 (alpha) on FreeBSD 6.1 fails make check-all
Hi Developers,
The alpha, compiles successfully, but it is failing make check-all (on
two seperate machines, both FreeBSD 6.1).
Here is the version string:
platform i386-unknown-freebsd6.1
arch i386
os freebsd6.1
system i386, freebsd6.1
status alpha
major 2
minor 3.0
year 2006
month 03
day 27
svn rev
2004 Oct 19
1
lapack test failed (PR#7294)
Hallo,
I've just installed R on our Opteron System (AMD Opteron 246). Running make check-all
results in a failure during the lapack test:
> ## ------- tests of random real and complex matrices ------
>
> ## 100 may cause failures here.
> eigenok <- function(A, E, Eps=1000*.Machine$double.eps)
+ {
+ V <- E$vect; lam <- E$values
+
2006 Jul 22
1
compile R with ACML support | RHEL 4
Greetings -
I'm trying to compile R under GNU/Linux (RHEL 4) on a multi-Opteron box,
with ACML support.
First, I downloaded and installed ACML 3.5 - GNU version, although I'm
not entirely sure what the differences are - from the AMD website. The
ACML libraries were installed to /opt/acml3.5.0/
Second, I ran ./configure --with-blas='-lacml'
The configure went fine,
2009 Jun 26
1
can't use ATLAS or ACML | 2.9.0
So, tried again from scratch. Again, CentOS 5.3, which is essentially
RHEL 5.3.
./configure --with-blas="-L/opt/acml4.3.0/gfortran64/lib -lacml"
In config.log, get things like
configure:37199: checking for dgemm_ in -L/opt/acml4.3.0/gfortran64/lib
-lacml
configure:37230: gcc -std=gnu99 -o conftest -g -O2
-I/usr/local/include -L/usr/local/lib64 conftest.c
2005 Sep 06
1
Build R with AMD pgi compiled ACML library
Hi,
Has anyone had any luck in using portland group compiler to build
R(-devel) with AMD's pgi compiled ACML library? I've downloaded the
packages and set LD_LIBRARY_PATH, and run configuration script as follow:
% ./configure --prefix=/usr/local/R.pgcc --with-blas='-lacml'
However, it failed to pick up double complex BLAS,
checking for sgemm_ in -lacml... yes
checking
2009 Jun 26
1
problems compiling for RHEL 5.3 x86_64
Well, CentOS 5.3, which amounts to the same thing.
I recently decided to upgrade my main research machine from Fedora Core
8 -> CentOS 5.3. Basically, I was looking to move to a distro with
longer 'term-of-life' than the release schedule for Fedora currently
allows. The machine is a multi-Opteron box, so both 32- and 64-bit apps
natively supported. Since I do a lot of 'linear
2006 Jun 03
0
Irregularity in stem() display (PR#8934)
Hi, R people.
Consider the following small R session:
======================================================================>
> a <- c(8.48, 9.58, 9.96)
> stem(a)
The decimal point is at the |
8 |
8 | 5
9 |
9 | 6
10 | 0
> stem(round(a,1))
The decimal point is at the |
8 | 5
9 |
9 | 6
10 | 0
2010 May 28
2
Compiling R-2.11.0 with ATLAS-tuned BLAS and LAPACK
Hello. I am a Linux neophyte and know almost nothing ?about compiling,
so I would appreciate any help and advice y'all would care to offer.
I am trying to compile the 64 bit version of R using a tuned ATLAS and
LAPACK (ATLAS 3.9.24). I am running Ubunto 10.04 LTS (through wubi,
FWIW). The ATLAS and LAPACK files (atlas.so, f77blas.so, lapack.so,
and cblas.so) are sitting in the folder
2007 Aug 24
2
config error during 2.5.1 compile
Have been running 2.5.1 on my multi-pro Opteron box running Fedora Core
5 with no problems. Had compiled previously with no problems. However,
for a variety of reasons (mostly due to ACML upgrade), I tried a
recompile using the following sequence of commands (note I'm compiling
in ACML support for blas):
LD_LIBRARY_PATH=/opt/acml3.6.1/gfortran64/lib
export LD_LIBRARY_PATH
./configure
2006 Oct 20
2
mac_portacl
Hi, folks.
I am trying to implement reverse proxy using squid with mac_portacl,
but i have problem while binding squid to port 80.
Am i missed something?
Here is my mac_portacl variables:
# sysctl security.mac.portacl.
security.mac.portacl.enabled: 1
security.mac.portacl.suser_exempt: 1
security.mac.portacl.autoport_exempt: 1
security.mac.portacl.port_high: 1023
security.mac.portacl.rules:
2006 Oct 16
3
x86_64, acml-3.5.0-gfortran64 and lme4
I am encountering segfaults when checking the lme4 package on an
Athlon64 system if I use the acml blas. R was built as a 64-bit
application using the GCC 4.0.3 compiler suite including gfortran.
The version of acml is 3.5.0 gfortran64.
I do not encounter the segfaults when I compile R with R's built-in
BLAS. The errors occur in the first example in lme4 in a call to
lmer. It looks like
2007 Nov 26
1
Problem with configure's detection of glob on 2.6.0 (PR#10468)
Full_Name: Mike Pacey
Version: 2.6.0
OS: SuSe Linux 9.3 x86_64
Submission from: (NULL) (194.80.32.10)
A "vanilla" version of R configures and compiles without a problem on my system.
Switching to using the PGI compiler configures correctly (see the values at the
bottom fo thismessage), but compilation aborts with:
pgcc -I../../src/extra/zlib -I../../src/extra/bzip2
2010 Aug 24
1
Trouble configuring R to use ACML
I am trying to get R to use the ACML BLAS, specifically the 'mp' version for
multithreading.
I have installed acml-4-4-0-gfortran-64bit
I added /opt/acml4.4.0/gfortran64_mp/lib to $LD_LIBRARY_PATH.
I ran: sudo ./configure --with-blas="-L/opt/acml4.4.0/gfortran64_mp/lib
-lacml_mp"
At the end of the configuration, the only external library listed is
readline, and at the end
2006 Oct 24
1
Cook's Distance in GLM (PR#9316)
Hi Community,
I'm trying to reconcile Cook's Distances computed in glm. The
following snippet of code shows that the Cook's Distances contours on
the plot of Residuals v Leverage do not seem to be the same as the
values produced by cooks.distance() or in the Cook's Distance against
observation number plot.
counts <- c(18,17,15,20,10,20,25,13,12)
outcome <- gl(3,1,9)
2009 Jun 25
1
check stats fail | part III
For grins, tried rebuilding R 2.9.0 without using ACML 4.3.0. Config
goes fine, make runs without any errors.
make check - and - ta-dah! - no errors for stats. Everything seems to
check out just fine.
So, it seems as if R 2.9.0, ACML 4.3.0, and perhaps one/more things
under CentOS don't play nice.
Will trying unloading 4.3.0, installing 4.2.0 (which worked before on
the Fedora box), and
2006 Mar 10
2
problem building R-patched on x86-64 with PGI 6.1
Dear R-devel,
[I'm not sure if this is appropriate for R-devel. If not, I'm more than
happy to move it to R-help.]
As those of you who saw my post on R-help know, I've been trying to build
R-patched on a dual Opteron box running Scyld Beowulf, using the PGI 6.1
compilers. The build went fine, but I couldn't get it to pass make
check-all. Jennifer Lai, who reported success with