similar to: R 2.4.0, methods and rebuild management

Hello, dear R experts! I run R on Debian 'sarge' platform. There is 'r-mathlib' package in Debian distribution, which is described as: $ dpkg --status r-mathlib ... This packages provides the libRmath shared and static libraries which can be called from standalone C or C++ code. Well, I use runif() function in test_runif.c: #include <Rmath.h> main() { // ...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

First of all I would like to join the chorus of approval over the release of R 1.0.0. It really is an excellent piece of software. I'm sure you will astonish us again with Omega. I have a query about Mathlib. It is such a nice collection of functions that it would be nice to use it in other software, not necessarily related to R. Is it possible to build Mathlib separately, and/or install

Dear all, I having this problem on my laptop. It was caused by my clumsy attempts to upgrade the system. As I wrote here, (http://www.mail-archive.com/r-sig-debian at r-project.org/msg01364.html) I was trying to solve the same problem with JAGS/rjags on my laptop. After typing R in a terminal I'm currently get the following: > R version 2.9.0 (2009-04-17) > Copyright (C) 2009 The R

I have pulled Jim Lindsey's repeated library and put it under the libraries directory, as are all the other toolboxes. 2 questions: Running R COMPILE *.c and *.f goes fine except that Mathlib.h cannot be found - it is not in the include library. I cannot find any other Mathlib.h on my system anywhere - presumably this is an R specific module. Was this missing from the 0.62.4 distribution -

>>>>> Dirk Eddelbuettel >>>>> on Tue, 1 Sep 2020 07:56:53 -0500 writes: > On 1 September 2020 at 13:01, Richard Dodd wrote: > | I needed some statistical functions for a project I was working on in > | Rust, and I've used the R math library as a standalone solution. I > That's its purpose as far as I can tell. We have

Hello, I can't link a c code with Mathlib according to introduction of R manual "Writing R Extensions", page 60. It is written : "It is possible to build Mathlib, the R set of mathematical functions documented in 'Rmath.h?, as a standalone library 'libRmath? under Unix and Windows. (This includes the functions documented in Section 5.7 [Numerical analysis

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor. Having to call setRepositories causes

hello all, At my workplace, our colleague Mukesh has just completed a port of speex 1.2.1 to Palm OS. He had to write a couple of mathlib functions, but the trunk remains unchanged. It works quite well, I was wondering if there will be any interest in this port in the distribution. - farhan

Hi, i have used S4 classes to implement a unified access to random number generators (package rstream on CRAN). I have used a construct to allow optional arguments: if(!isGeneric("rstream.sample")) setGeneric("rstream.sample", function(stream,...) standardGeneric("rstream.sample")) setMethod("rstream.sample",

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421Kb to 115Kb consider

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421Kb to 115Kb consider

Hi, I'm seeing something that may be a bug in R's standalone math library, which is packaged by Debian as r-mathlib. I reported it to the Debian BTS as http://bugs.debian.org/657573 I'm using Debian squeeze, and the code was tested with r-mathlib 2.11.1-6 (default on stable) and 2.14.1-1 (from testing/unstable). I summarize this report below. The following code with the R math

Hi, When loading a package that provides the user-supplied RNG hook user_unif_rand, calling getNativeSymbolInfo("user_unif_rand") returns informations about the loaded symbol. I am using this to identify which package currently provides the RNG hook. The results are the same on windows and linux if only one library provides the hook. If one loads a second package that provides this

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421Kb to 115Kb consider

Hello, i have following problems using dovecot-antispam plugin (Dovecot >1.1.3, FreeBSD 8.0-Current, dovecot-antispam 1.0/1.1) dovecot-antispam compiled using dspam-exec/mailtrain, with/wo debugging (i've tried all possibilities) When i try to move message to SPAM folder (using dspam-exec backend) i'm getting IMAP error: antispam signature not found and in dovecot logs: Nov 23 23:44:24

Hello, I am trying to use Yan and Rossini's Makefile for cross building Windows versions of R packages in Linux with R 1.9.0. When compiling R with the mingw tools I get an error about expm1 being undeclared when first found at src/main/arithmetic.c:1019 If I fiddle a bit with it later on I also get errors about log1p bein undeclared. Any idea what should I look for? I am using R 1.9.0 in

Hello, I am trying to use Yan and Rossini's Makefile for cross building Windows versions of R packages in Linux with R 1.9.0. When compiling R with the mingw tools I get an error about expm1 being undeclared when first found at src/main/arithmetic.c:1019 If I fiddle a bit with it later on I also get errors about log1p bein undeclared. Any idea what should I look for? I am using R 1.9.0 in

Anyone know what the problem is with IRIX 6.5 ? (esp if there is a solution?). Looks like the built-in math stuff is masking definitions from R source. (passing this along for a friend). best, -tony From: Andreas Krause <Andreas.Krause@genedata.com> To: "A.J. Rossini" <rossini@biostat.washington.edu> Subject: Re: splus shell escapes # download ./configure R is now

Hello, I'm trying to configure the dovecot-antispam plugin. Now I've run into a problem: whenever I try to move/copy a message in/from the spam mailbox, Thunderbird (and also Sylpheed, haven't tried anything else) says: The current command did not succeed. The mail server responded: Failed to read mail beginning. and in the logs I get: dovecot: Aug 07 10:41:23 Error: