Displaying 20 results from an estimated 9000 matches similar to: "R-devel: rownames of a data.frame"
2006 Aug 01
1
Global setting for na.rm=TRUE
Hello!
Is it possible to set na.rm=TRUE in a global way? I'am constantly
forgeting on this when performing analyses. I agree that one should
be carefull with this when developing some code, but not necesarilly
so in data analysis.
Lep pozdrav / With regards,
Gregor Gorjanc
----------------------------------------------------------------------
University of Ljubljana PhD student
2005 May 08
2
Extract just some fields from XML
Hello!
I am trying to get specific fields from an XML document and I am totally
puzzled. I hope someone can help me.
# URL
URL<-"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=11877539,11822933,11871444&retmode=xml&rettype=citation"
# download a XML file
tmp <- xmlTreeParse(URL, isURL = TRUE)
tmp <- xmlRoot(tmp)
Now I want to extract only
2006 Aug 07
2
Constrain coefs. in linear model to sum to 0
Hello!
I would like to use constrain to sum coeficients of a factor to 0 instead
of classical corner contraint i.e. I would like to fit a model like
lm(y ~ 1 + effectA + effectB)
and say get parameters
intercept
effectA_1
effectA_2
effectB_1
effectB_2
effectB_3
where effectA_1 represents deviation of level A_1 from intercept and
sum(effectA_1, effectA_2) = 0 and the same for factor B.
Is
2006 Oct 12
1
Problems with package foreign (r-cran-foreign)
On 12 October 2006 at 13:02, Gregor Gorjanc wrote:
| Hello!
|
| I encounter the following problem when I try to load package foreign
|
| library(foreign)
| Error in dyn.load(x, as.logical(local), as.logical(now)) :
| unable to load shared library '/usr/lib/R/library/foreign/libs/foreign.so':
| /usr/lib/R/library/foreign/libs/foreign.so: undefined symbol:
| Rf_allocString
| Error:
2006 Jul 02
4
Test for argument in ...
Hello!
Say I have a function foo1, which has argument ... to pass various
arguments to foo2 i.e.
foo1 <- function(x, ...)
{
foo2(x, ...)
}
Say that foo2 accepts argument arg1 and I would like to do the following:
- if foo1 is called as foo1(x) then I would like to assign some value to
arg1 inside foo1 before calling foo2
arg1 <- "some value"
foo2(x, arg1=arg1)
- if foo1 is
2006 May 20
3
How long is winepath available?
Hello!
Can someone provide me an estimate or relevant source of information on
how long is command winepath available or from wich version of wine? I
would need this as I work on some R[1] package R2WinBUGS[2] that calls
a Windows program WinBUGS[3] and that program needs windows paths.
Currently winepath or parsing of .wine/config is used and I wonder if I
can remove fiddling with .wine/.config.
2005 Mar 25
4
Gmail invitation
Hello R users!
I just found out that I have 49 invitations for Gmail (gmail.google.com).
I have been using it now for a while and is really nice. Don't forget
1 GB for free.
I will invite those who respond to this mail by FIFO.
--
Lep pozdrav / With regards,
Gregor Gorjanc
------------------------------------------------------------------------
University of Ljubljana
Biotechnical
2005 Jun 28
2
Producing character "given" i.e. "| " with plotmath
Hello!
Does someone know how to produce
L(y|mu)
with plotmath?
Some code with unsuccessfull results:
plot(dnorm(x = seq(from = -4, to = 4, by = 0.1)), type = "l")
## Not what I want
legend(legend = c(expression(L(y:mu))), x = "topright")
## Strange, is this a bug?
legend(legend = c(expression(L(y|mu))), x = "top")
## Group produces an error
legend(legend =
2005 Feb 22
6
Run Sweave and LaTeX directly from command line
Hello!
Those of you, who use Sweave a lot, will probably find my shell script
usable. You can get it at:
http://www.bfro.uni-lj.si/MR/ggorjan/programs/shell/Sweave.sh
No warranty, however don't hesitate to contact me if you find an error or
have a patch!
--
Lep pozdrav / With regards,
Gregor GORJANC
---------------------------------------------------------------
University of
2005 Jul 25
1
FW: LyX and Sweave
Hello R-users!
I have tried to use Sweave within LyX* and found two ways to accomplish
this. I have attached LyX source file for both ways.
*<http://www.lyx.org>
Lep pozdrav / With regards,
Gregor Gorjanc
----------------------------------------------------------------------
University of Ljubljana
Biotechnical Faculty URI: http://www.bfro.uni-lj.si/MR/ggorjan
Zootechnical
2006 Mar 14
1
Internal codes of the factor
Hello!
I am writing some functions and I repeatedly acces internal factor
codes. I figured out that internal codes are 1:n where 1 represents 1st
level, 2 2nd level etc. This is not documented and I wonder if this is
on purpose and subject to change or would be a good idea to add this to
documentation for factor? I can prepair a pacth if this is accepted.
--
Lep pozdrav / With regards,
2005 Nov 17
1
Problem with fitdistr for gamma in R 2.2.0
Dear R developers,
I have encountered strange behaviour of fitdistr for gamma in recent R
build i.e. 2.2.0. I have attached the code for data at the end of this mail
so you can reproduce the problem. In short, I am able to run fitdistr under
2.1.0 without problems, while I get the following error under 2.2.0
(Version 2.2.0 Patched (2005-11-15 r36348))
> fitdistr(otm, "gamma")
Error
2005 Mar 27
3
F90
Hello!
Has anyone successfully compiled F90 sources in R-package? I found the
same question on r-devel list from 2002 and I wonder if there is any
progress. I heard that g95 and gfortran can be usable.
And one more thing. I have a program written in F90 and lets suppose that
compiler is not a problem. I've read manual 'Writing R Extensions' and
successfully loaded one F77 subroutine
2005 Mar 27
3
F90
Hello!
Has anyone successfully compiled F90 sources in R-package? I found the
same question on r-devel list from 2002 and I wonder if there is any
progress. I heard that g95 and gfortran can be usable.
And one more thing. I have a program written in F90 and lets suppose that
compiler is not a problem. I've read manual 'Writing R Extensions' and
successfully loaded one F77 subroutine
2005 Jun 08
1
FW: Random seed problem in MCMC coupling of chains
And a last post from Paul Gilbert. Thanks to all! This disscusion was
really beneficial for me!
-----Original Message-----
From: Paul Gilbert [mailto:pgilbert at bank-banque-canada.ca]
Sent: sre 2005-06-08 21:01
To: Gorjanc Gregor
Subject: Re: [R] Random seed problem in MCMC coupling of chains
Gorjanc Gregor wrote:
> Thanks to Paul and Gabor for additional tips/examples. Actually, I find
2006 Mar 28
6
Remove [1] ... from output
Hello!
I am writing some numbers and character vectors to an ascii file and
would like to get rid of [1] ... as shown bellow (a dummy example)
R> runif(20)
[1] 0.653574 0.164053 0.036031 0.127208 0.134274 0.103252 0.506480 0.547759
[9] 0.912421 0.584382 0.987208 0.996846 0.666760 0.053637 0.327590 0.370737
[17] 0.505706 0.412316 0.887421 0.812151
I have managed to work up to remove quotes
2006 Aug 05
1
R CMD check and RUnit
Hi!
I appologize for crossposting, but this might be of broader interest.
In case you are interested in fusing RUnit with R CMD check under unix
alike OS, here is one way of doing/hacking this.
My aim was to perform unit tests:
(1) during R CMD check
(2) at any other time
Say you have a package PKG in a map PKG. I use the following structure
PKG
|- R
|- ...
|- inst
| |- doc
| `-
2006 Feb 10
8
Fitdistr and MLE for parameter lambda of Poisson distribution
Hello!
I would like to get MLE for parameter lambda of Poisson distribution. I
can use fitdistr() for this. After looking a bit into the code of this
function I can see that value for lambda and its standard error is
estimated via
estimate <- mean(x)
sds <- sqrt(estimate/n)
Is this MLE? With my poor math/stat knowledge I thought that MLE for
Poisson parameter is (in mixture of LaTeX
2006 Mar 20
2
levels for list and data.frame
Hello!
Does R core find the following pacth usefull - I created methods for
levels for list and data.frame, which can be usefull to get a list of
levels for entries in a list or columns in a data.frame. Patch is
attached and shown bellow example
# Example
> tmp <- list()
> tmp$a <- factor(letters[1:10])
> tmp$b <- factor(letters[5:14])
> tmp$c <- 1:10
> tmp1 <-
2005 May 03
2
r-doc-html link problems
Hello!
I have a Debian package r-doc-html 2.1.0-1 and I can't find the HTML files
of manuals. Contents of the package are:
$ dpkg -S r-doc-html
r-doc-html: /usr/share/doc/r-doc-html/changelog.Debian.gz
r-doc-html: /usr/share/doc/r-doc-html/manual/R-data.html
r-doc-html: /usr/share/doc/r-doc-html/manual/R-lang.html
r-doc-html: /usr/share/doc/r-doc-html/copyright
r-doc-html: