similar to: MinGW and the ld bug

Hi All, I am trying to make R package using R 2.6.2 And I am getting following error. When I give R CMD check t1\ ---------- Making package t1 ------------ adding build stamp to DESCRIPTION making DLL ... making CGHseg_rewrite.d from CGHseg_rewrite.c making rowMedians.d from rowMedians.c making runavg.d from runavg.c gcc-sjlj -std=gnu99 -Ic:/R/R-2.6.2/include -O3 -Wall -c

Hi, I've got a version of rowMedians(x, na.rm=FALSE) for matrices that handles missing values implemented in C. It has been optimized for memory and speed. To avoid coercing integers to doubles, and hence allocate an additional 200% memory, there is one C function for integers and one for doubles. The rowMedians() implementation is currently sitting in my non-CRAN package R.native

Hi Everybody, I am having a problem with loading Biobase package. I typed 2 lines below at R prompt > source ("http://boconductor.org/biocLite.R") > biocLite (lib="/usr/local/lib/R/library") which attempted to install a bunch of packages with varying degree of success. Out of 29, 13 failed. Biobase is one of them. As a matter of fact, when I looked at logs, most

Does anyone know if it is possible to add a dictionary file of known words that becomes part of the *built* package to tell 'R CMD check --as-cran' not to report these words as misspelled. I want this dictionary to come with the *.tar.gz such that it will be available regardless where the package is checked. For instance, currently I get: * using log directory

Hi, I am trying to using SAMseq() to analyze my RNA-seq experiment (20000 genes x 550 samples) with survival endpoint. It quickly give the following error: > library(samr)Loading required package: imputeLoading required package: matrixStats Attaching package: ?matrixStats? The following objects are masked from ?package:Biobase?: ? ? anyMissing, rowMedians Warning messages:1: package ?samr? was

Sorry forgot to use plain text format, hope this time it works: Hi, I am trying to using SAMseq() to analyze my RNA-seq experiment (20000 genes x 550 samples) with survival endpoint. It quickly give the following error: > library(samr) Loading required package: impute Loading required package: matrixStats Attaching package: ?matrixStats? The following objects are masked from

I have a question about shallow copies in R. Since R 3.1.0, subsetting a dataframe with respect to its columns no longer result in deep copies. This is an amazing change in my opinion. Now, subsetting a data.frame by rows (or subsetting a matrix by columns or rows) still does deep copies. In particular, it is my understanding that running a command on a very large subset of rows (say

Dear R gurus, I have been struggling with this for a while and thought you might be able to give me some guidance. I have a data frame, on which I apply a row function. The result looks to me like a vector that retains the old row names. I then sort the vector and subsequently need to be able to identify the rank of certain values by searching for their row names. See this mock example: >

Hello All, I need your help. I am analysing affymetrix data and have to select the probe-set that has median expression among all the probe-sets for same gene. This way I want to remove the redundancy by keeping the analysis to single gene entry level. I am fully aware that it is not a nice thing to do but I just have to do it. To do so, I came across 'findLargest' function of

The "micEcon" package has been split into three packages: miscTools, micEconAids, and micEcon. a) miscTools (version 0.6-0) includes miscellaneous small tools and utilities that are not related to (micro)economics, e.g. colMedians(), rowMedians(), insertCol(), insertRow(), vecli(), symMatrix(), triang(), semidefiniteness(), compPlot(), and rSquared(). The miscTools package should depend

The "micEcon" package has been split into three packages: miscTools, micEconAids, and micEcon. a) miscTools (version 0.6-0) includes miscellaneous small tools and utilities that are not related to (micro)economics, e.g. colMedians(), rowMedians(), insertCol(), insertRow(), vecli(), symMatrix(), triang(), semidefiniteness(), compPlot(), and rSquared(). The miscTools package should depend

Hi, I have a 250,000 by 300 matrix. I am trying to calculate the median of those columns (by row) with column names that are identical. I would like this to be efficient since apply(x,1,median) where x is created by choosing only those columns with same column name and looping on this is taking a really long time. Is there an efficient way to do this? Thanks! [[alternative HTML version

Hi, I've got the following two versions of R on WinXP: A) R Version 2.3.0 Under development (unstable) (2006-02-02 r37243) B) R Version 2.3.0 Under development (unstable) (2006-03-27 r37579) and a the following "test.R" script: foo <- function(path, ...) { print(path) } bar <- function(x, ...) foo(...) wow <- function(x, ...) capture.output(foo(...)) bar(1, path=2)

Hi is anybody aware of a function to calculate a the median for specified columns in a dataframe or matrix - so analogous to rowMeans? Thanks Max --

Hello, I have a problem with the checking and building of R packages that contain C or FORTRAN code. I have implemented R 2.3.1 (2006-06-01) and the corresponding toolset under Windows XP and Windows 2000. The MinGW compiler components are (exactly as recommended for R 2.3.1) gcc-core-3.4.5-20051220-1.tar.gz gcc-g++-3.4.5-20051220-1.tar.gz gcc-g77-3.4.5-20051220-1.tar.gz

Thanks for the new updates in v2.2.1. I just noticed a few "problems" on http://cran.r-project.org/bin/windows/base/. 1) The CHANGES and NEWS files for v2.2.1 does not include info on v2.2.1 but only details up until v2.2.0, cf. http://cran.r-project.org/src/base/NEWS 2) The patched version is now denoted "beta" (files and installation directory), which I believe is

Hello list, I would like to cross-compile R packages using R 2.4.0. I am working on Linux Debian and cross-compiled (windows binaries) without problems with older R version. I have used the doc of Yan and Rossini in the contributed section of the R documentation (same version of MinGW...). When I try to cross-compile R (make R), the procedure stopped and returns :

Shorewall 3.4.6 running on SuSE Linux 10.2 Compiling Rule Activation... Shorewall configuration compiled to /var/lib/shorewall/.restart Processing /etc/shorewall/params ... Restarting Shorewall.... /sbin/shorewall: line 665: 6782 Segmentation fault $SHOREWALL_SHELL ${VARDIR}/.restart $debugging restart got this with V3.4.4, updated to 3.4.6 this morning, but that didn''t help.

On 3/29/2006 7:48 AM, Martin Maechler wrote: > Hi Duncan, > > Just in case you haven't been alerted yet; > I think the bug mentioned is caused by this change in coerce.c : Thanks, I was just coming to the same conclusion. I'll look into it. Duncan > > ---------------------------------------------------------------------------- > r37269 | murdoch | 2006-02-05

Hello Dovecot users, I finally release the first version of Pigeonhole v0.4 for Dovecot v2.2. The main reason for the delay was that some unexpected (design) problems occurred with the new doveadm-sieve plugin, which allows synchronizing sieve scripts using doveadm sync. One important change is that I incorporated the extprograms plugin into the main Pigeonhole release. With this plugin it