similar to: S4 classes in existing packages

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

Hi All Please see the Rprofile file which i have modified as follows and after that when I start R then I see that R says to me "TRUE" for all the packages implying that all loaded at once. But when i try to use commands as simple as help("lm"), it doesnt work nor any of the menu "Packages" is not working. Although the regression using lm ( Y ~ X ) is working

Hi! Recently I try to find the method maximum likelihood for gamma,weibull,Pearson type III,Kappa Distribution, mixed exponential distribution, skew distribution. I have tried function ms() for gamma two parameters and weibull two parameters.It works but not for Pearson type III. I have problem to find the likelihood function for mixed exponential distribution and kappa distribution. So can

After some reorganization, we would like to announce the availability on CRAN of a new version (1.6) of our package "distr" as well as the availabilty on CRAN of the new packages "distrEx", "distrSim", "distrTEst", "RandVar". ----------------------------------------------------------------------------------------- Changes from 1.5 to 1.6 -[former

After some reorganization, we would like to announce the availability on CRAN of a new version (1.6) of our package "distr" as well as the availabilty on CRAN of the new packages "distrEx", "distrSim", "distrTEst", "RandVar". ----------------------------------------------------------------------------------------- Changes from 1.5 to 1.6 -[former

Hi All user, I have been using R-2.5.1. dose orientlib support this version? I would like to try. it. I have been wondering how to install the library. With regards, abu _________________________________________________________________ Celeb spotting ? Play CelebMashup and win cool prizes

On Tue, Oct 6, 2015 at 4:58 PM, Adrian Du?a <dusa.adrian at unibuc.ro> wrote: > Hi Gabriel, > > On Tue, Oct 6, 2015 at 10:59 PM, Gabriel Becker <gmbecker at ucdavis.edu> > wrote: > >> [...] >> >> At the very least, this is seems to be a flagrant violation of the >> *spirit* of the CRAN policy, which AFAIK is intended to enforce >>

------------------------------------------------------------------------ ------------------------------------------------------------------------ New versions 2.3 of our distr-family of packages are now available on CRAN. (i.e.; startupmsg, SweaveListingUtils, distr, distrEx, distrDoc, distrEllipse, distrMod, distrSim, distrTEst, distrTeach) Most importantly, we have included: +

------------------------------------------------------------------------ ------------------------------------------------------------------------ New versions 2.3 of our distr-family of packages are now available on CRAN. (i.e.; startupmsg, SweaveListingUtils, distr, distrEx, distrDoc, distrEllipse, distrMod, distrSim, distrTEst, distrTeach) Most importantly, we have included: +

I wanted to try out package distrMod, so I did > install.packages('distrMod') > library(distrMod) and played around, saved and quit. Now whenever I start up in this directory, I get distr and lots of other stuff loaded and lots of messages. How do I keep it from automatically loading, other than starting over in another directory? I read ?Startup, but I couldn't suss out

Hello, I want to know if there are some functions or packages to solve differential and integral equation using R. Thanks. Shao chunxuan. [[alternative HTML version deleted]]

We would like to announce the availability on CRAN of new versions of our packages "distr" (1.8), "distrEx" (0.4-4), "distrSim" (1.8), "distrTEst" (1.8), "startupmsg" (0.4) as well as a new package "distrDoc" (1.8) [all of them require R >= 2.2.0] -----------------------------------------------------------------------------------------

We would like to announce the availability on CRAN of new versions of our packages "distr" (1.8), "distrEx" (0.4-4), "distrSim" (1.8), "distrTEst" (1.8), "startupmsg" (0.4) as well as a new package "distrDoc" (1.8) [all of them require R >= 2.2.0] -----------------------------------------------------------------------------------------

I would like to apply network measures (such as betweenness centrality, upper boundedness, etc.) to a weighted graph with non-integer weights, defined by a euclidean distance matrix. The package sna provides the measures that I want to use, but seems only to operate on binary graphs. I have read work by Mark Newman (http://aps.arxiv.org/abs/cond-mat/0407503/), who suggests that a weighted graph

Is there any automatic mechanism for extracting a likelihood or test statistic distribution (PDF or CDF) from an object of class "htest" or from another object of a general class encoding a hypothesis test result? I would like to have a function that takes "x", an object of class "htest", as its only argument and that returns the likelihood or test statistic

I haven't seen this cryptic warning before: > update.views('Robust') Warning message: In update.views("Robust") : The following packages are not available: covRobust, distr, FRB, MASS, mblm, multinomRob, mvoutlier, quantreg, RandVar, rgam, RobAStBase, robfilter, RobLox, RobRex, robust, RobustAFT, robustbase, ROptEst, ROptRegTS, rrcov, sandwich, wle >

We would like to announce the availability on CRAN (with possibly a minor delay until on every mirror) of new versions of our packages in the "distrXXX"-family (version 1.9), i.e.; "distr", "distrEx", "distrSim", "distrTEst", and "distrDoc" as well as of package for managing startup messages, "startupmsg" (0.5). [all of

We would like to announce the availability on CRAN (with possibly a minor delay until on every mirror) of new versions of our packages in the "distrXXX"-family (version 1.9), i.e.; "distr", "distrEx", "distrSim", "distrTEst", and "distrDoc" as well as of package for managing startup messages, "startupmsg" (0.5). [all of

Dear developers, We want to use "\S4method" to document new S4-methods for "[" and "[<-". We use this for other functions/methods and it works without any problem, but in case of "[" and "[<-" we didn't manage to bring this to work. The problem occurs in the development version of our package "distrSim" which can be found

We would like to announce the availability on CRAN of new versions of our packages "distr" (1.7), "distrEx" (0.4-3), "distrSim" (1.7), "distrTEst" (1.7), as well as a new package "startupmsg" [all of them require R >= 2.2.0] ----------------------------------------------------------------------------------------- ************ new package