similar to: segfault during build of 2.1.0 on RH9; print.POSIXct implicated (PR#7826)

In attempting to build R using rpmbuild --rebuild R-2.1.0-0.fdr.2.fc3.src.rpm on a fairly up-to-date RedHat 9 system (that is, with patches installed through May 1 2004), it failed at the make check-all step. The problem was reproducible by going into the tests directory and make test-Segfault The last lines of the saved file no-segfault.Rout.fail are > > ## c.POSIXct : > >

1) Why did you submit this *twice*, as PR#7826 and PR#7827? Please don't be so careless of the volunteers' time. 2) > print.POSIXct function (x, ...) { print(format(x, usetz = TRUE, ...), ...) invisible(x) } is definitely *not* implicated. (Use of ... in two places is correct.) 3) On FC3: > unusual_and_faults Error: protect(): protection stack overflow >

Dear Peter, Thank you very much for your kind and helpful reply. As I mentioned in a followup email to r-bugs, indeed, one aspect of this issue is a (user specified) shorter stack than that expected by R -- I had only allowed 1 MB of stack space a long long time ago, and forgotten about it. Due to a glitch with r-bugs@r-project.org, I ended up submitting this bug twice, and your original

Thank you, Jskud. I can reproduce your problem, though not the seg.fault, see below >>>>> "Jskud" == Jskud <Jskud@Jskud.com> >>>>> on Sat, 30 Apr 2005 09:04:03 +0200 (CEST) writes: Jskud> In attempting to build R using rpmbuild --rebuild Jskud> R-2.1.0-0.fdr.2.fc3.src.rpm Jskud> on a fairly up-to-date RedHat 9 system (that

hi! i am experiencing the same behaviour explained here: http://finzi.psych.upenn.edu/R/Rhelp02/archive/2482.html (i copied the message below) has anybody found a solution? here is the code that gives me a segmentation fault library(Rdbi) library(Rdbi.PgSQL) conn <- dbConnect(PgSQL(), dbname = "PGA") tmp <- "create table test ( expid int, name varchar(128));"

one more bit of information about this problem. If I start R as the user "postgres" i dont have the segmentation fault. ---------- Forwarded message ---------- Date: Wed, 5 Feb 2003 19:19:39 -0500 (EST) From: Rafael A. Irizarry <ririzarr at jhsph.edu> Reply-To: rafa at jhu.edu To: "R-Help (E-mail)" <r-help at r-project.org> Subject: rdbi segmentation fault hi! i

>>>>> "VW" == Viechtbauer Wolfgang (STAT) <Wolfgang.Viechtbauer at STAT.unimaas.nl> >>>>> on Fri, 26 Sep 2008 18:00:19 +0200 writes: VW> Hi all, I'm trying to fit a marginal (longitudinal) VW> model with an exponential serial correlation function to VW> the Orange tree data set. However, R crashes frequently VW>

I recently built R 1.6.2 on solaris 2.8 with gcc 3.2. Things seem to run OK, but using graphics causes R to core dump. (For instance, by using the plot() or hist() functions.) Sometimes I can see the graphics drawn before it actually core dumps. The core file shows a crash in Rf_gpptr. I'm quite new to R, so I don't know what info would be helpful for diagnosis. I'm including

Ben, Thanks for the bug report. I am off two minds about it as discussed below. But as it does indeed create a crash / segfault, I am passing this on to the R bug tracker. A suggested two-line patch is below; I tested the patch against a 'vanilla' 2.6.1 source tree. On 6 December 2007 at 19:32, Ben Goodrich wrote: | -----BEGIN PGP SIGNED MESSAGE----- | Hash: SHA1 | | Package:

I would say this was user error (insisting on editing non-existent rownames), although the argument is documented. You could argue that there are implicit rownames, but they would be 1, 2 ... not row1, row2 .... And rownames(mat) is NULL. For an interactive function the best solution seems to be to throw an error when the user asks for the impossible. I'll fix it for 2.7.0: it

Example run and stack trace: wazor /s/src/stat/R-1.8.0/tests/Examples $ ../../bin/R --no-save < base-Ex.R R : Copyright 2003, The R Development Core Team Version 1.8.0 (2003-10-08) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a

If anyone has a few extra CPU cycles to spare, I'd appreciate it if you could verify a problem that I have encountered. Run the code below and tell me if it crashes your R before completion. library(lme4) data(bdf) dump<-sapply( 1:50000, function(i) { fm <- lme(langPOST ~ IQ.ver.cen + avg.IQ.ver.cen, data = bdf, random = ~ IQ.ver.cen | schoolNR); cat("

I've trapped this segfault with gdb, but I'm not sure what it means or what to do next. Paul _____ $ R -d gdb GNU gdb 4.17 Copyright 1998 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is

Hi, R v2.1.1 patched (2005-05-26) for Windows crashes. The sympotoms are like "memory leakage". The patched version from two days ago crashes at a different position in R CMD check compared to todays version. A "REPRODUCIBLE" EXAMPLE: Unfortunately, I cannot create a minimal code example reproducing the crash, but here is at least a simple way to reproduce it: 1. Make

The Fedora Extras update of R found its way onto my systems today and I noted that fix() and edit() no longer work. There is a program crash that closes up R, but it does not leave a core file. I've tested by turning off SELinux, it had no effect. Do you see it too? What do you think? It happens on both systems I've tested. As far as I know, both of these systems are up-to-date. I

I originally posted this to R-help, but here is probably a better place. I have a rather complex routine which works great in R. Then I bootstrap it. After running a few minutes it typically segfaults, though it happens very randomly. This happens w/ 1.9.0 and 1.9.1 on Fedora1 and a Scyld (RH7.3) system. Traces always point back to routines in src/main/memory.c, though often not the same

Hola. Tengo un problema con la instalación de paquetes en R. Por ejemplo, al intentar instalar el paquete "psych" o "abind" obtengo lo siguiente como resultado (ya sea que lo haga descargado el paquete, o ya solicitando que lo haga desde la red). Utilizo R 2.15.1 en Ubuntu 11.10 y apenas estoy iniciando en R. Necesito ayuda para resover estos problemas, pues necesito sobre todo

I'm a novice with gdb but the following is the result of a segfault problem I've been having with 1.2.0. If there is something else I should do to get more useful information at this point, then someone please let me know. Paul Gilbert ______ [5] /home/mfa5/gilp/zzot : R -d gdb GNU gdb 4.17 Copyright 1998 Free Software Foundation, Inc. GDB is free software, covered by the GNU General

I frequently get a segmentation fault error when using the "plot" command. It happens about half the time. We are running an old version of R (R version 2.8.0 (2008-10-20) on Linux. I did a quick search for this problem and didn't find anything. Apologies if I missed it. *** Process received signal *** Signal: Segmentation fault (11) Signal code: Address not mapped (1)

Hello!, this is my first post, I am a beginner user of ubuntu linux. I have a problem installing packages from CRAN repositories, I mean using the command install.packages(). I followed the instructions from this site http://cran.r-project.org/index.html. I know that I need the ubuntu package r-base-dev to install packages with that command. I run in a terminal the following commands: