similar to: Sd2Rd command (PR#7791)

I am on Solaris 7, using R_1.7.1 developing packages for both Splus and R. We have a working R-package for haplo.score and now converting to haplo.stats. R CMD INSTALL -l /people/biostat3/sinnwell/Rdir/library haplo.stats_1.1.0.tar.gz works like a charm-- as comparable to our working version of haplo.score. But problems are when I'm loading the library within R. Within my package I have

Re-sending this from 10/7. Please help! I'm really clueless how to fix this: System: Solaris 7, Software: R_1.7.1 for unix > R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz -works like a charm-- no syntax errors, etc But problems are when I'm loading the library within R. > library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library") > Error

We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system

Using R 1.8.1 on Solaris Developing an Splus and R package from the same files. Creating an alias for multiple functions to the same file in .sgml: <s-topics> <s-topic> my.function </s-topic> <s-topic> print.my.function </s-topic> </s-topics> using R CMD Sd2Rd would convert to: \name{my.function} \alias{my.function} \name{print.my.function}

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

I'm using R 2.2.0 on Windows. Doing some conversions of help files. Internal comments indicate that the Sd2Rd conversion is "Converted by Sd2Rd version 1.21." I'm converting .d -> .Rd .sgml -> .Rd using Sd2Rd, then checking by using Rdconv to convert .Rd back to .d or .sgml. Here are errors in some of the conversions. The most significant errors are in .Rd to .sgml.

Oops, Just found a typo. Here's the updated version. -k *********************************************************************** #!/usr/bin/perl $VERSION = "0.1-5"; $\ = "\n"; $parenLevel = 0; $inVerbatim = 0; $inSeeAlso = 0; $doprint = 1; $needArg = 1; $needVal = 0; $output = ""; use Getopt::Long; GetOptions (("x")) || &usage(); while

Thanks to Martin, there is another update of the S doc -> R doc script. It now correctly maps .SE into SECTION. -k *********************************************************************** #!/usr/bin/perl -w $VERSION = "0.1-3"; $\ = "\n"; $parenLevel = 0; $inVerbatim = 0; $inSeeAlso = 0; $doprint = 1; $needArg = 1; $needVal = 0; $output = ""; $opt_x = 0; use

Another update of the S doc -> R doc conversion script is attached below. Relative to the previously released version, there are two changes. * Quoting of parentheses does not happen in verbatim-like sections * More importantly, the way words in the .SA (SEEALSO) section are treated is now controlled by an optional argument, `-x'. Without this option, only words enclosed in single

Documentation for S3 functions is apparently written in troff markup with macro tags like .BG .FN .TL .DN .CS ... Inspection of S3 documentation source files gives a pretty clear idea of what these mean, semantically (and Sd2Rd is a perl script which converts this markup into the Rd format, providing further semantic information along the way). My query is: Can anyone point to troff

Attached is another update. New features/bugs: *) now also attempts to get non-quoted object names within SEEALSO sections to have a LANG(LINK(...)) around them *) parentheses are now ALWAYS quoted, to prevent the rdoc2... scripts from choking on unbalanced ones (e.g., "x in the range (0, 1]") *) blank lines are mapped into PARA so that e.g. reference sections come out better *)

Here's the details and some debugging I did for starters, but I have no idea where to proceed from here. Help please? Command to reproduce should be in the strace output below. -Dan P.S. Sorry for sending this a few times; I think only one will make it through to the list since I wasn't subscribed initially. $ rsync --version rsync version 3.1.0 protocol version 31 Copyright (C)

Hi all, Hope someone can help me. I start out with a matrix called haplo with 600 rows and two columns. To start with, the elements of the matrix are character strings of 20 numbers. I then want to create separate objects, called ha1-ha600, that are the concatenated 20 + 20 numbers, as numeric. I am having no trouble doing anything except getting the index i to paste to the object ha(i) in

Dear colleagues, I face a problem doing haplotype analyses with haplostats: when I use the haplo.em function, the programme gives an error message because of 'recursive default argument reference.' I am not able to figure out what this means. Could you perhaps help me? The full output is the following: > library(haplo.stats) >

Hi all, I have a R script that creates several input files for an analysis program. It loops through the matrix read into R and picks out submatrices and then creates a separate output file for each submatrix. The loop works great, but I am having trouble getting all the separate output files written. The line I have is: write.table(ch1d,

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

I've just uploaded an R version of Daniel Schaid's 'haplo.score' library (from http://www.mayo.edu/statgen/) to CRAN. >From the DESCRIPTION file: [haplo.score is a] suite of routines that can be used to compute score statistics to test associations between haplotypes and a wide variety of traits, including binary, ordinal, quantitative, and Poisson. These methods assume

I am using R 1.2.3 on Linux Mandrake 7.2. I have a ton of S Nroff help files that end with source code typified by the following: Last S statement in an example, e.g. X <- y ..KW models ..KW regression ..WR When using R RMD Sd2Rd to create the .Rd file I get X <- y \keyword{models} \keyword{regression} } The } matches a { in \examples{ at the beginning of the example code (started in