similar to: man page of hist points to truehist, which can't be viewed without loading a library?

I've been having problems building vignettes in bioconductor packages with R-devel. Turns out that Rdevel/share/texmf/hyperref.cfg wants Blue and Red predefined, when only blue and red are defined (as of rsync Rdevel, Sept 10th). This is on a Debian unstable system (Sept 9th version). Might not apply to all other tetex systems. Seems to have bitten the bioconductor build system, though.

I'm trying to track down a rather critical problem. This happens both on Debian's current unstable as well a from anoncvs built this morning, reinstalling MASS. Is anyone else seeing this or am I just broken and special? 609$ /home/Rdevel/bin/R R : Copyright 2004, The R Foundation for Statistical Computing Version 1.9.0 Under development (unstable) (2004-03-04), ISBN 3-900051-00-3 R

Hello! Up to now I have been using hist() to display the distributions. Howevere, I noteiced strange numbers on y (vertical) axis, if I used probability = T or freq = F option. I thought it is a bug and launched the R-bug system and found some posts on that matter. Brian Ripley responded to one, that one should look at truehist() for that. Ok I can use truehist() if I want to see the ratios

Parallel programming with snowFT Our package snowFT is now available at CRAN. It is an extention of the package snow, which adds fault tolerance (in the sense of recomputing computational units when hardware/network failures occur on compute nodes) and a tighter notion of reproducibility for computations running on clusters. It additionally provides tools for flexible management of cluster size

Parallel programming with snowFT Our package snowFT is now available at CRAN. It is an extention of the package snow, which adds fault tolerance (in the sense of recomputing computational units when hardware/network failures occur on compute nodes) and a tighter notion of reproducibility for computations running on clusters. It additionally provides tools for flexible management of cluster size

http://www.analytics.washington.edu/~rossini/courses/cph-statcomp/ Lecture/Labs 1 and 2 are on For ESS, ESS-Noweb-Sweave. Lecture/Lab 4 is on parallel computing with R (each Lecture/Lab was just under 2 hours). Comments/corrections welcome, they were used last week here in Copenhagen, so "most" of the bugs are out. best, -tony p.s. Lecture/Lab 3 on visualization needs to be

cvs -z3 -d :pserver:anoncvs@anoncvs.r-project.org:/cvs co R setuid failed: Operation not permitted -- rossini@u.washington.edu http://www.analytics.washington.edu/ Biomedical and Health Informatics University of Washington Biostatistics, SCHARP/HVTN Fred Hutchinson Cancer Research Center UW (Tu/Th/F): 206-616-7630 FAX=206-543-3461 | Voicemail is unreliable FHCRC

I wrote: > I'm trying to track down a rather critical problem. This happens both > on Debian's current unstable as well a from anoncvs built this > morning, reinstalling MASS. Is anyone else seeing this or am I just > broken and special? And it was just me. Solution (thanks Deepayan, with hints from Dirk): ./tools/rsync-recommended from the root directory of

I wrote: > I'm trying to track down a rather critical problem. This happens both > on Debian's current unstable as well a from anoncvs built this > morning, reinstalling MASS. Is anyone else seeing this or am I just > broken and special? And it was just me. Solution (thanks Deepayan, with hints from Dirk): ./tools/rsync-recommended from the root directory of

For various reasons, I spent part of my time today looking at sample size and power calculation tools (don't ask, don't tell...). This seems to be one area that R is incredibly weak in (well, nearly all stat packages, except perhaps specialized tools and SAS); sure, there are a number of functions in various packages: base, statmod, Hmisc Have I missed something? (I

I'm seeing weird issues in methods initialization, i.e. loading marrayClasses loads Biobase, and when explicitly done, as in library(Biobase) library(marrayClasses) is fine, but when Biobase is loaded via a require statement in marrayClasses' .First.Lib, I end up with: Warning message: In the method signature for function "coerce", class "exprSet" has no

Hi to all who suffer from rterm not shutting down in xemacs/ESS on windows NT or 2000. Also hi to those who could eventually help. Here is some more information which could help and some ENCOURAGEMENT to contribute to a solution. 1. It may be an xemacs problem but it is more likely an interaction between rterm/comint/and xemacs. In fact, the problem started occurring around version R 1.6.0. I

Alvaro Munoz (Hopkins Epi) is patenting the "diamond graph". http://www.jhsph.edu/Press_Room/Press_Releases/Munoz_diamond_graph.html There is enough prior art (hexagonal binning, among others) to make this amusing, except that it probably will get a patent. It's a reasonable graphical technique, but patentable? best, -tony -- A.J. Rossini rossini at u.washington.edu

Another example: Jerry Friedman's MART is available in R from Salford for the same price as the stand-alone TreeNet, even though they don't advertise it on their web site. Andy > -----Original Message----- > From: rossini at blindglobe.net [mailto:rossini at blindglobe.net] > Sent: Sunday, August 17, 2003 9:50 PM > To: rhelp > Cc: pralay at cytel.com > Subject: [R]

Greetings! The Bioconductor core group would like to announce the 5th release of Bioconductor, version 1.4. There are many new packages as well as several major upgrades and fixes in older packages, and users are encouraged to upgrade existing tools and check out the new packages. Release 1.4 is intended to be operated with R version 1.9.x, which can be obtained at CRAN

Since it of partially related interest here: The Emacs Statistical System (Emacs Speaks Statistics) WWW site, along with all of the content formerly on software.biostat.washington.edu, is moving with me to a new location, http://www.analytics.washington.edu/ with ESS specifically moving to http://www.analytics.washington.edu/Zope/wikis/ess/ It isn't really done, but should be by a

At JSM, I spent a bit of time with old friends at the Cytel booth (makers of StatXact/LogXact). They were wondering whether it was both feasible and of interest to create a package of the StatXact compute engine for R (to be commercially licensed, not for free!), similar to what they've done for SAS. As far as I know, it's feasible, (this is not the first commercial external package,

It is interesting how things have changed -- 5 weeks later, I review materials collected at the JSM, and notice that Springer-Verlag's glossy statistics catalog has 3 of 9 books on the front page directly or indirectly related to R (Peter D's intro book, MASS, and Parmigiani et.al's book with a number of Bioconductor-related chapters). (one could argue that 8 of 9 could use it -- it

Hi, I'm wondering how can I change the position of xlab in truehist. For example, the following code creats a histogram with 4 bins for my discrete data. I want each bin to be labelled as 0, 1, 2, or 3 in the middle, so that it's clear each bin corresponds to each of the discrete case. I was thinking of first delete xlab and then add marks myself, but it doesn't look like it's

Hi, I have a simple problem that I would appreciate getting some tips. I am using the "truehist" function within an "apply" call to plot multiple histograms. I can't figure out how to get truehist to use the column names of the matrix as the labels for the x-axis of the histograms. Here is a simple example: X <- matrix(runif(4000),ncol=4) colnames(X)