similar to: negative p-value from fisher.test() (PR#7064)

Full_Name: Anja von Heydebreck Version: 1.3.0 OS: Alpha Unix Submission from: (NULL) (141.14.19.61) Hi, I repeatedly obtained meaningless results from the function 'cutree' in the 'mva' package, when the argument 'h' was greater or equal to the maximum height occuring: > library('mva') > y [,1] [,2] [,3] [,4] [1,] 0 1 -1 1 [2,] 0 -1

The function heatmap() allows to specify row/column labels via the options labRow/labCol. From the code of heatmap(), I understand that when no labels are specified, the row/column labels (or indices) of the input matrix are taken as labels and re-ordered together with the rows and columns of the matrix before plotting, whereas labels supplied via labRow/labCol are plotted in the original order.

Full_Name: Anja Eggert Version: 2.4.1 OS: Submission from: (NULL) (139.30.70.203) I want to install the pheno package. This is not working. What can I do? Thank you very much, Anja

Dear R team, I have a simple question. I tried this command: phyper(17,449,19551,181, FALSE) [1] 1.47295e-07 and then I tried this command: (fisher.test(matrix(c(17,449,181,19551),2,2), alternative='greater'))$p.value [1] 3.693347e-06 Shouldn't be identical the results of the two commands ? What is the difference ? Thx a lot -- View this message in context:

hi all, I have a matrix and named each row and column as like below... a<-matrix(c(seq(3,45,3),seq(10,6,-1)),4,5,byrow=F) > col<-c("peter","david","richrd","vincent","selva") > rows<-c("julius","caeser","anja","maya") > dimnames(a)<-list(rows,col) > a peter david

Hallo, I'd like to write a GUI (first choice with GTK+). I've surfed through the R- an Omegahat-Pages, because I'd like to use RGTK2, GTK 2.10.11 in combination with glade on Windows XP (perhaps later Unix, Mac). I've found a lot of different information. Because of the information I'm not sure, if this combination is running on Windows XP and I'm unsure how it works. Is

Greetings, I have "inherited" a cDNA macroarray dataset that is structured as follows. Three different stressors were tested. For each stressor, there are two treatments (control and stressed). For each treatment, two biological replicates exist, and these are paired (i.e., there is a stressed array for colony A and a control array from this same colony). For one of these samples,

Dear R-Team! I am a beginner in R and use the WISP library for a project. I am using mark-recapture to estimate abundance. I would like to know if it is possible to only survey a part of the created area (with the created population) and not all of it. I am trying to quantify bias introduced by non random sampling design (i.e. the area is 24x100 but I only wanna search 24x40) Thank you already in

Dear everyone, Your code is slow and you are interested in performance optimization for scientific software? Figuring out where’s the bottlenecks guided by performance evaluation tools. If you are interested in porting your code to a HPC hardware platform and architecture, than OpenACC as a user-driven directive-based performance-portable parallel programming model might be a solution. What are

I'm using fisher.exact on a 4x2 table and it seems to work. Does anyone know exactly what is going on? I thought fisher.exact is only for 2x2 tables. Note: I can't use chi-squared because I have a couple of cells with 0 and < 5 observations. -- View this message in context: http://r.789695.n4.nabble.com/fisher-exact-for-2x2-table-tp3481979p3481979.html Sent from the R help

Any errors atm in syslog and/or messages and the samba logs.   And the interval of the problem, still 5 days?       Gr.   Louis       Van: Oliver Werner [mailto:oliver.werner at kontrast.de] Verzonden: dinsdag 22 maart 2016 11:00 Aan: L.P.H. van Belle CC: samba at lists.samba.org Onderwerp: Re: [Samba] Problem with Winbind and Windows Clients   Hi,   now i have tested again

Ok, next test. Change : kerberos method = secrets and keytab to kerberos method = secrets and wait again. I'll explain by giving this link. http://changelogs.ubuntu.com/changelogs/pool/main/s/samba/samba_4.3.6+dfsg-1ubuntu1/changelog Look at the last line bugfix in this change log of 4.3.6. Im testing here also, because this looks like its also involves the kerberos changes, now, i

Hello All, I am a R newbie and am probably misinterpreting something really obvious... In the Rcmdr package there is a scatter3d() function that can fit a curve and also provide coefficients for the model. If I'm understanding this right, I think it's calling the lower level stats package function lm(), which is the part that actually does the curve fitting. Anyway, what has me

Hi, I am attempting to use phyper to test the significance of two overlapping lists. I keep getting a zero and wondered if that was determining non-significance of my overlap or a p-value too small to calculate? overlap = 524 lista = 2784 totalpop = 54675 listb = 1296 phyper(overlap, lista, totalpop, listb,lower.tail = FALSE, log.p=F) [1] 0 If I plug in some different values I get a p-value but

Ah..   So every 5 days this happens, correct ? Solution, reboot your pc every 4.99999999 days.    This way its gets a new ticket and isnt the old reused.   As it stats on the site,. " tickets can be renewed for a maximum of 5 days from the date of original issue."     Greetz,   Louis       > -----Oorspronkelijk bericht----- > Van: samba [mailto:samba-bounces

Hi Rowland, Also change on DCs to [libdefaults] default_realm = HQ.KONTRAST dns_lookup_realm = false dns_lookup_kdc = true ? I was used wiki article and there was listed for DC. the config i have post was only für vl0227 (my Master DC) all other Maschines have the config you prefer. OLIVER WERNER System-Administrator Kontrast Communication Services GmbH Grafenberger Allee 100,

Dear All I have a question about the hypergeomteric distribution. Example 1: I have a universe of 6187 objects, and 164 have a particular attribute, therefore 6187-164 do not have that attribute. I sample 249 of those objects, and find that 19 have that attribute. I get a p-value here (looking at just over-representation): phyper(19, 164, 6187-164, 249, lower.tail=FALSE) [1] 7.816235e-06

Hi, i have a permanent problem with my samba members. there lost after some times his connections to DCs and i need to restart winbind. Also same problem with winds client that running 24x7. After few days i can not logged in. i think thats a problem with kerberos tickets. i have checks samba logs and found that samba member and windows client ask for new tickets and get new expiration. in my

Hello, I've come across the following situation in R-1.8.1 (compile + running under RedHat 7.1): > phyper(24, 514, 5961-514, 53, lower.tail=T) [1] 1 > phyper(24, 514, 5961-514, 53, lower.tail=F) [1] -1.037310e-11 I'd expect the later to be 0 or some very small positive number. Is this a number under-flow of the calculation? Do you think I'm safe if I just set the result to 0

Confusing. Github says that is open. Ok. My mistake. The question remains why the Windows clients allow login for an expired certificate despite a correctly loaded CRL. What is the purpose of specifying the CRL in smb.conf? It seems to me that the smartcard login is not really reliable. Then my users still have to log in with password. For now, as long as 4.19 is not yet released. Hans