similar to: R CMD check dependency simplification

Dear R devels, let's say I have three packages "pkg1", "pkg2" and "pkg3" which all contain new S4 classes and methods. Where "pkg3" depends on "pkg2" and "pkg2" depends on "pkg1". Moreover, all three packages have namespaces. 1) I use ".onLoad <- function(lib, pkg) require(methods)". Do I also have to

I am being asked to modernize the Depends line in the DESCRIPTION file of some packages. Writing R Extensions says: The general rules are Packages whose namespace only is needed to load the package using library(pkgname) must be listed in the ?Imports? field and not in the ?Depends? field. Packages listed in imports or importFrom directives in the NAMESPACE file should

Hi, I have already asked a similar question twice without response on the r-help list https://stat.ethz.ch/pipermail/r-help/2009-June/200300.html but this list might be more appropriate. If there is a particular reason for the lacking answers (unclear, missing information, the solution is obvious to everyone except me, etc), I would like to know. The description below is generalized, but I

Hello, unfortunately I had to compile latest version of R-2.0.1 by myself. I'd rather would prefer vendors binaries but since the current version of Ubuntu defaults to 1.9.x I had to compile R on my own in order to be up to date! So far, everything went fine and R runs smoothly. Unfortunately I am not able to use R CMD INSTALL command to install add-on packages. I followed RNews 3/3 and

Hi, I have built two R packages. One of them (PKG1) needs to use the functions of the other package (PKG2). So I need to link these two packages together, so that the functions of PKG2 can be available to PKG1. And when I load one package using 'library("PKG1")', PKG2 can be loaded at the same. Any ideas welcome. -- View this message in context:

Hi, I want to cross-reference from the documentation of pkg1 to pkg2, which is imported in the NAMESPACE of pkg1, and under Depends in DESCRIPTION of pkg1. According to "Writing R extensions", this can be done by: \code{\link{foo}} when foo is an aliased function in the documentation of pkg2. This works as it should when I install the package, but when I run R CMD check pgk1, I get

Hi, 'R CMD INSTALL -l' will stop if some error is encountered. I don't find in the manual an option to keep the command running. Is there such an option? -- Tom

On Mon, 8 Aug 2016 18:38:49 +0200 Pino Toscano <ptoscano@redhat.com> wrote: > Implement the 'remove', 'file_list_of_package', and 'file_owner' methods > of the Linux module for the "deb" package manager (dpkg basically, on > Debian and derived distributions). > > Also allow it for the main conversion code. > --- >

Hello! I have a wish/proposal. Is it possible to include some option in install.packages() for Delete downloaded files (y/N)? at the end of that process. It can be quite anoying if you must install several packages and wait meanwhile to type y/n for each package separately. -- Lep pozdrav / With regards, Gregor GORJANC ---------------------------------------------------------------

Hi, I have already asked a similar question without response (https://stat.ethz.ch/pipermail/r-help/2009-June/200300.html) so I am here reformulating in the hope that someone is able to help. If something is unclear, please ask. I am working on the development of two packages, pkg1 and pkg2 (based on work in two different projects). pkg1 is quite generic, pkg2 tries to solve a particular

Hi, I am currently involved in the development of two R-packages, pkg1 and pkg2. They should not be dependent on each other, as most users will only be interested in one of them. Still, I want pkg2 to provide one extra S3 method for three functions (fun1-3) in pkg1 for objects of a class defined in pkg2 (class2), for those users who actually have both packages installed. I think this

i am able to install zip files of packages from local zip files using the file.choose() for the package argument in install.packages() function in R console and also from the Packages menu>install from local zip files. But if there are many packages to install (say >15 or 20), then i have to factor in dependencies of 15-20 packages which may be more than 100 or 200 packages in all to be

Greetings. I am a System Administrator, and thus have very little knowledge of R itself. I have been asked to install a list of some 200 packages (from CRAM) to R. Rather than installing each package manually, I was hoping I could script this. I've written a BASH script that hopefully will do this, but I'm wondering about the Mirror Selection portion of the installation process.

This patch series fixes the way supermin sorts the list of installed packages when resolving a name, picking the right package for the host architecture. Pino Toscano (5): rpm: do not unpack parameters rpm: fix version comparison rpm: query the RPM architecture rpm: fix package sorting (RHBZ#1696822) utils: remove unused 'compare_architecture' function src/librpm-c.c | 10

Hi everyone, Some of you probably received the following thread from the Rcpp-devel mailing list: http://lists.r-forge.r-project.org/pipermail/rcpp-devel/2018-August/010072.html Summing up, the issue described is the following: pkg1 provides type1 in pkg1.so building on some headers. pkg2 links to pkg1 (BTW, LinkingTo is actually misleading, because it doesn't really link to it), i.e.,

- convert the Fedora 20 examples to Fedora 25 - convert the yum examples to dnf - convert the Debian 7 examples to Debian 8 - mention that --core updates all the installed packages, not "core" ones - convert i386 to i686 for the Fedora 32bit examples - mention that autogenerated root passwords are printed on stdout - mention --get-kernel is deprecated in favour of virt-get-kernel -

Hi, I was installing hundreds of packages on a machine with a single call to install.packages() and after a long time the call to install.packages() finally returned with the following warnings and errors: Warning messages: 1: packages ?hgu133aprobe?, ?hgu95av2.db?, ?BSgenome.Celegans.UCSC.ce2?, ?BSgenome.Mmusculus.UCSC.mm10?, ?BSgenome.Dmelanogaster.UCSC.dm3.masked?,

Hi, It feels like I should be able to do something like: R CMD INSTALL lib='/usr/lib64/R/library' repos='http://proxy.url/cran' package We have a bunch of servers (compute nodes in a Rocks cluster) in an isolated subnet, there is a basic pass-through proxy set up on the firewall (the head node) which just passes HTTP requests through to our nearest CRAN mirror. when using

Hi, is it intended that one cannot install packages in non-interactive mode, without explicitly setting a CRAN mirror (see below)? Couldn't a default mirror be used in that case? Thank you. Bests, Renaud $ Rscript --vanilla -e "install.packages('whatever')" Installing package into '/home/renaud/R/x86_64-pc-linux-gnu-library/3.0' (as 'lib' is unspecified)

On Tue, 21 Jul 2020 at 11:05, Jos? Ab?lio Matos <jamatos at fc.up.pt> wrote: > > On Friday, 3 July 2020 18.36.17 WEST I?aki Ucar wrote: > > Nice! What if we create a group "R" on Pagure and a repo > > "fedora-scripts" or something like that? > > I would like to improve the scripts but FWIW here it comes a rough version of > the script I used.