similar to: works in R-1.1.1 but not in R-development; why?

Dear all, I am trying to prepare some figures where I'd like the color of the plot region (i.e., the area bounded by the axes) to be different from the margin area (i.e., the area of the figure not within the axes region). I can use "bg" but that changes the background of everything? How can I accomplish what I want? Thanks, Ramon -- Ramón Díaz-Uriarte Triana 47 28016 Madrid

Dear R experts, Could anyone give some concrete examples of how to call R functions from a program written in C++? Thanks in advance for your help. Nathapong Samlamjiag _________________________________________________________________________ Get Your Private, Free E-mail from MSN Hotmail at http://www.hotmail.com. Share information about yourself, create your own public profile at

Dear Colleagues, We are using the phylog.gls.fit() function from the R package "PHYLOGR" (Diaz-Uriarte R, Garland T: PHYLOGR: Functions for phylogenetically based statistical analyses. 2007. Available at [http://cran.r-project.org/web/packages/PHYLOGR/index.html]) to correct for lack of independence between data points. (In our particular case, the lack of independence is due to

Dear All, I am having problems making and using the standalone library, after succesfully installing R from the tar.gz file (I am using Linux, with R-patched, but I have similar problems with R-devel). First, when I do: root at ligarto:/usr/lib/R-patched/src/nmath/standalone > make .... ar: mlutils.o: No such file or directory make[1]: *** [libRmath.a] Error 1 make[1]: Leaving directory

I have a general question about coefficients estimation of the mixed model. I simulated a very basic model: Y|b=X*\beta+Z*b +\sigma^2* diag(ni); b follows N(0,\psi) #i.e. bivariate normal where b is the latent variable, Z and X are ni*2 design matrices, sigma is the error variance, Y are longitudinal data, i.e. there are ni

Hi I am looking for a package that 1. reads in a phylogenetic tree in NEXUS format 2. given two members/nodes on the tree, can return the distance between the two using the tree. I came across the following packages on CRAN ouch, ape, apTreeShape, phylgr all of which seem to provide extensive range of functions for reading in a Nexus-format tree and performing phylogenetic analyses, tree

Dear All, With a colleague we are writing a paper where we show how R is a very nice tool to deal with some issues in the analyses of data in evolutionary biology. For the intro, I wonder if 1) Anybody has any rough idea of how many people might be using R or how many people have downloaded R, or similar (I am aware answering this question might require divinatory powers...). 2) Have/are any

Hi everyones, my function like; e <- rnorm(n=50, mean=0, sd=sqrt(0.5625)) x0 <- c(rep(1,50)) x1 <- rnorm(n=50,mean=2,sd=1) x2 <- rnorm(n=50,mean=2,sd=1) x3 <- rnorm(n=50,mean=2,sd=1) x4 <- rnorm(n=50,mean=2,sd=1) y <- 1+ 2*x1+4*x2+3*x3+2*x4+e x2[1] = 10 #influential observarion y[1] = 10 #influential observarion data.x <- matrix(c(x0,x1,x2,x3,x4),ncol=5) data.y

Hi, we are just about to evaluate R as a standard statistics package for our institute. We looked around the help - manual, the FAQ, etc. and did not find anything for the topics of random factors in ANOVA, repeated measures in ANOVA, or within subjects designs in R. Could anyone point us to any information concerning - univariate approach to repeated measures anova - multivariate

Hi, I' am interested in differences between sample's result when samples consist of full elements and consist of only distinct elements. When sample consist of full elements it take about 120 sec., but when consist of only distinct elements it take about 4.5 or 5 times more sec. I expected that opposite of this result, because unique(sample) has less elements than full sample. Code as

Dear All, When generating pdf documentation for a package (using R CMD Rd2dvi --pdf), is there a way to get the date to use the typical international standard of day month year instead of the US one of month day, year? Thanks, Ramon -- Ramón Díaz-Uriarte Dept. Zoology and Statistics University of Wisconsin-Madison Madison, WI 53706-1381 email: rdiazuri at students.wisc.edu (NOTE: starting

Hello, I'd like to ask whether there is a prefered linux distribution for use with R (Suse, Redhat, Debian) and what fortran compiler is recommended (f77 or f2c)? Thank you -- Dr. Jens Oehlschl?gel Analyse BBDO InterOne Gr?nstr. 15 40212 D?sseldorf Tel.: +49 (0)211 1379-187 Fax.: +49 (0)211 1379-461 http://www.bbdo-interone.de

Dear All, The help for prcomp, under "Value" says: sdev: the standard deviation of the principal components (i.e., the eigenvalues of the cov matrix, though the calculation is actually done with the singular values of the data matrix). The way I read it, it implies that the sdev are the eigenvalues, but I think that sdev is actually the square root of the

On Wed, 30-12-2015, at 12:44, Dirk Eddelbuettel <edd at debian.org> wrote: > On 30 December 2015 at 05:00, Dario Strbenac wrote: > | Good day, > | > | In section A.2, the manual advises "Linux users will want the urw-fonts package". However, this package only seems to be available for RedHat Linux and Fedora Linux. What about for Debian or Ubuntu ? There is no

On 30 December 2023 at 23:49, Ramon Diaz-Uriarte wrote: | All is good. (Just for the sake of curiosity, and if you have the time: why did you find those incantations suspicious?) Memory is fuzzy and no ECC in my wetware :) but as I seem to recall it had to do with my fears over filenames not being standardized enough / this interfering with the update-alternatives mechanism. May well have been

Dear All, I think I am confused about how I'd be able to use zlib starting with R 2.7.0. I just downloaded the latest development version, built it, etc, but I am not able to find the zlib.h that, I believe, R should place somewhere under "where/you/want/R/to/go" (from --prefix=/where/you/want/R/to/go). There seem to be entry points for zlib in the binary (e.g., grep -r gzopen ./

Dear All, I just apt-get source r-base-core and noticed that file "rules" under ./r-base-3.2.4-revised/debian contains (lines 277 to 279) --with-system-bzlib \ --with-system-pcre \ --with-system-zlib \ I wonder if these are still necessary and, in fact, when building R alpha (specifically, R-alpha_2016-03-21_r70361.tar.gz) I get a warning saying that those options are not

Dear All, I'd like to be able to have R store (in a list component) a compressed data set, and then write it out uncompressed. gzcon and gzfile work in exactly the opposite direction. What would be a good way to handle this? Details: ---------- We have a package that uses C; part of the C output is a large sparse matrix. This is never manipulated directly by R, but always by the C code.

How can i use a dat tape on another remote LM9 machine. Using tar and keeping the original ownership/permissions. or smbmount to the machine with the files on and again keeping the original ownership/permissions. Many Thanks Ken

Dear All, I want to use R's random number in a C++ program (I can link libRmath either as shared or static library). I have two questions: 1. If I understand correctly, the underlaying random number generator will be Marsaglia-multicarry, UNLESS I provide my own. In other words (unless I provide it) I cannot use some of the other RNG's available from within R, such as Mersenne-Twister?