similar to: How to document man/*.Rd pages with images?

Dear R-users I am slowly migrating my mex files (MATLAB - Fortran and C) to R. To get my own functions available on R section I have decided to learn how to build a R package. I choose a simple example with a few Fortran and R functions (wrapper). The fortran sources are located at src and the R functions at R (as recommended). The building process went ok but R CMD check did not. The error

Hi, all. I was trying to build my R package with R 2.15.1 32bit and win7. I basically follow the routine in Steven Mosher's blog http://stevemosher.wordpress.com/step-10-build/ After I fixed the path, and built the skeleton of the package, I started command prompt and used the following commands in building my package Rcmd check myPackageName Rcmd build myPackageName Rcmd check

I checked the R procedure HCLUST (hierarchical clustering) but it looks like it requires a full triangular n x n similarity matrix as input, where n = number of observations. The number of variables is 200. My data set has n = 50,000 observations (keywords), and I use ad-hoc similarity measures, not available in R, to measure keyword similarity. Here, the vast majority of the n x n similarities

Hi, apparently I sent my question about using R and C++ to the wrong list, ironically seeing as that list was called Rcpp. Anyway, I was directed to post my question here. To summarize my current question, I have found two commands that I want to be able to put into a package. The commands are 'R CMD SHLIB X.cc X_main.cc' and

I have compiled ssh 3.7.1p1 using gcc and am trying to get it to run on our Solaris 8 systems running Sun's SRM system. With existing users it is fine, but with a new user, the user can not ssh in on the first login, they get the message from SRM that no lnode has been created. I put sshd in debug and found that it SEG's here: debug3: mm_sshpam_free_ctx: waiting for

Hi, I have a weird thing I don¹t understand. Here¹s what I did: I read some data: data=read.table("fileName²) then I printed the data to the screen: data But it didn¹t finish: lot¹s of data was written out, but not all of it... Then it interrupted and said: [ reached getOption("max.print") -- omitted 8178 rows ]] Is there a setting somewhere that I can change to get to see all of my

This may be asking too much, but I'm wondering if anyone has a solution (even a hack) for creating multiple (overlay) plots in an Sweave file and post-processing the overlays in beamer appropriately. For example, suppose I have a series of figure blocks in my .Rnw file: <<plot1,fig=TRUE>>= [stuff] @ <<plot2,fig=TRUE>>= [stuff] @ <<plot3,fig=TRUE>>=

Hi, I have trouble with Sweave (I think) cutting of my newlines. As stated in the help of Sweave, I generate tex code straight from R for dynamically computed reports. If I do this in R: for (i in 0:4) {cat("\n",i,"\n")};cat("\n 3") 0 1 2 3 4 3 The output looks correct. However, Sweave for some reason seems to trim everything outside

Hello. I am making a backend for a virtual machine. But it does assume infinite number of virtual registers unlike those of usual machines. In this case, how can I implement this? Would you mind telling me some tips? Thank you so much. Seung Jae Lee

Hi all I'm using Sweave and find it a treat. But one question: I use Sweave to create my pictures which are automatically included into LaTeX. For example, in the file test.Snw, I may have: % LaTeX stuff \begin{figure} <<fig=true,width=5,height=5>>= x1 <- seq(1,5, length=10) x2 <- sin(x1) plot(x1,x2) @ \caption{Plot} \end{figure} % More LaTeX This produces the LaTeX

Hi, what is actually the best method to include R-plots into LaTeX documents? At the moment i use postscript("myplot.eps", width = 12.0, height = 9.0, horizontal = FALSE, onefile = TRUE, paper = "special",encoding = "TeXtext.enc") plot(foo,bar) dev.off() But it is a bit unhandy to scale later and its difficult to get nice formula in the plots. And how should

Dear R-users I am trying to understand how Sweave works by running some simple examples. In the example I am working with there is a chunk where the R-commands related to plotting a figure are placed. When running R CMD Sweave ? , pdflatex the output is a portrait figure. I wonder whether it would be possible to change the orientation to landscape (not in the latex file but in Rnw file). Many

Greetings- I have a strange problem displaying a graph from R (1.3.1, linux) in a LaTeX document of documentclass seminar. I'm using graphicx to include the file: \usepackage{graphicx} ... \resizebox{\textwidth}{\textheight}{\includegraphics{crime.eps}} When I do this, the entire slide (including the page number) is rotated 180 degrees. Any ideas why this happens? The graph was created

Hi, I'm new in Latex and I'm trying to include an R chart into a Latex document. This is what I'm doing: 1) In R: save the chart as a a Postcript in a folder C:/xxx/Density.eps 2) In Latex (using TexWorks on windows xp) : In the preambule: \documentclass[11pt]{article} \usepackage{graphicx} \begin{document} blah..blah…blah \begin{figure} \centering

bRotheRs & sisteRs, I am once again attempting to learn enough Latex voodoo to get something done, and failing comically. The document "RJAuthorguide.pdf" mentions that one can get page width figures through the use of the "figure*" or "table* environments, but despite considerable searching through the mail archives and reading Frank Harrell's discussion of

Hi, I am trying to run the command: R CMD INSTALL -l mypath mypackagename from within R (Windows XP) using system() and get the following error: ARGUMENT 'CMD INSTALL -l D:/R/JMB.LIBS jmb.test' __ignored__ Fatal error: you must specify '--save', '--no-save' or '--vanilla' My function contains these 3 lines: setwd("D:/R/R.pkgs") # path to files set

Tha handy thinb about the fig=TRUE option in Sweave is that you do not have to bother about filenames and starting and stpping the device. I want the the resulting LaTeX to look as: \begin{Schunk} \begin{Sinput} > x <- seq(-2 * pi, 2 * pi, 0.1) > plot(x, cos(x), type = "l", lwd = 4) \end{Sinput} \end{Schunk} \begin{figure} \includegraphics[width=0.6\textwidth]{xx-001}

I have recently "printed" in R to a postscript file. I'm working on a SSH without an X terminal. It was fairly automatic: > plot(x,y) > dev.off() And then the default creates a file called Rplots.ps which I can ftp to my laptop and open in Ghostscript. I can see the file, and nothing looks odd. However, when I import it into LaTeX, it refuses to configure right side up.

Hello, folks! I'm trying to use R as a graphics program, to make some pretty graphs that will go into prosper slideshows. I wrote this fragment, from the R manual, into a file demo.R: x=seq(-3,3,0.1) postscript("cm_test.eps", width = 4.0, height = 3.0, horizontal = FALSE, onefile = FALSE, paper = "special", family =

Hi all, I manage to create a VM (slackware image) and hide the PCI device (qlogic HBA) from Dom0 to DomainU. Now the Dom0 cant see this HBA and the ''xm list -l'' shows this pci device under the DomainU. But how can I do some scsi inquiry or check if this PCI device is visible to the DomainU from the DomainU''s console. Any help? Thanks and regards Ashit