similar to: ctest miscellania

We've seen the integer overflow problem in ks.test before, easily solved. The help page says x and y must be numeric, so this is user error. I've added tests to the code. Why do people file bug reports without reading the help/man page? On Tue, 14 Jan 2003 bates@stat.wisc.edu wrote: > This was filed as a bug report on the Debian r-base package. It is > more properly a bug

This was filed as a bug report on the Debian r-base package. It is more properly a bug report on the ctest package in R. The default method for wilcox.test manipulates x and y without checking the class or data.class of these objects. Possible solutions are - create wilcox.test.factor (if appropriate) - check the class and/or data.class of x and y in wilcox.test.default and produce error

I am contemplating improving my ctest package as follows: * Add exact p,q,r,s functions for the Wilcoxon distribution, and change the test accordingly (make `exact' work). * Make Fisher's test work for tables larger than 2 by 2. * Perhaps add an exact unconditional test for 2 by 2 tables? * Perhaps add something on estimating/testing relative risk and odds? As clearly I'd like to

Hello out there, my first try to install a package (e.g. ctest from CRAN) didn't succeed; looking at the error messages I think it must be a configuration problem of my machine, but as I'm not very experienced I would be glad if someone could give me a hint ... R's version is 0.63.0, my i386-Linux is kernel 2.0.35. I hadn't had problems to compile R, and R itself seems to work.

Hi,. I've installed RSPerl on my Linux box. It runs all of the test scripts that I've been able to find. I've learned that I can pass in vectors of data as array-refs, and can use named parameters with R::callWithNames and a hash of names and values. The one problem that I'm left with is how to call a function from an add-on package ('ctest' in this case). I know that

I tried to build R-1.1.1 on my HP-UX 10.20 box. For this I installed gcc 2.95.2 and built g77 (version 2.95.2 19991024 (release)). Making R runs to the point, where shared libs are linked. There it reports: make[4]: Entering directory `/disk4/hoffmann/Work/rwork/src/library/ctest/src' gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c

Dear All, I am using fexact.c on a C++ program I wrote. To minimize dependencies on other files (e.g., to not need to include R.h and ctest.h ---now I only include the R files Boolean.h, Constants.h, and Memory.h), I have re-written all declarations of Sints as ints and, what is potentially more serious, I have re-written the line (lines 329 and 330, in fexact.c on R-1.6.1) /* IMAX is the

(CC'ed to R-bugs ``for the record'') >>>>> "BDR" == Prof Brian D Ripley <ripley@stats.ox.ac.uk> writes: BDR> On Thu, 13 Jun 2002, Martin Maechler wrote: >> >>>>> "MM" == Martin Maechler >> <maechler@stat.math.ethz.ch> writes: >> >> >>>>> "BDR" ==

I am trying to get R 1.0 running on the Mac. The main target is MacX. Anyone else working on that? For the recent Macintosh system, I am trying to compile R using MachTen. The R core compiles and runs without any changes, using the Unix make files. The libraries give some problems, presumably due to handling of shared libraries. It seems I am missing something to link. Before I spend my time

Hi, I'm trying to compile R-1.7.1 from source (on a RedHat 8.0) instead of using the binary version, as it has often been advised. However I don't manage to find a solution to the following error which occurs during the make procedure : /!\-------------------------------------------/!\ building package 'ctest' mkdir -p -- ../../../library/ctest/R mkdir -p --

Hi, Is there a limit on the number of observations for using cor.test. For example, > library(ctest) > cor.test(rnorm(3000), rnorm(3000), method="spearman") Error in if (q > (n^3 - n)/6) pspearman(q - 1, n, lower.tail = FALSE) else pspearman(q, : missing value where logical needed In addition: Warning message: NAs introduced by coercion I mainly want to calculate

Hi, I have a problem with getting through the make process. It fails during the ld process. Can someone explain the errors that I get ? `Makedeps' is up to date. `libappl.a' is up to date. `libmath.a' is up to date. `libunix.a' is up to date. `../../bin/R.X11' is up to date. building package `base' ../../../library/base/R/base is unchanged building package `ctest'

Full_Name: Ian Wilson Version: R-1.8.0 OS: Windows (but own compilation) Submission from: (NULL) (139.133.7.38) the p-value is incorrect for cor.test using method "spearman" in R-1.8.0. This was not the case in R-1.7.1. Version R-1.8.0 on Windows > cor.test(rnorm(50),rnorm(50),method="spearman") Spearman's rank correlation rho data: rnorm(50) and rnorm(50) S

Hi, all. In trying to compile R v.0.90 on an alpha running Red Hat Linux 6.0, I'm getting the following error: make[3]: Entering directory `/home/mcw/alpha-R/R-0.90.0/src/appl' gcc -I. -I../include -I../../src/include -DHAVE_CONFIG_H -mieee -g -O2 -c cpoly.c -o cpoly.o /tmp/ccPjZNwd.s: Assembler messages: /tmp/ccPjZNwd.s:312: Error: unknown opcode `sqrttsu' /tmp/ccPjZNwd.s:2631:

Thanks to Brian Ripley, Douglas Bates, and Peter Dalgaard, who all pointed me towards the assembler (or compiler/assembler conflicts) as the likely culprit in my earlier "opcode" errors (most of original question below). After a lot of looking around, we found out that the particular alpha system we bought (from Microway) doesn't like the gnu compilers; it prefers Compaq's c

Hi, been trying to build R-1.5.1 for som eof our users here. No probs with gcc-3.2 32-bit installtion, but thought we'd try it with the 64-bit just for the crack. Configuring thus CC=gcc3 CFLAGS="-m64" CXX=g++3 CXXFLAGS="-m64" F77=g773 FFLAGS="-m64" LDFLAGS="-m64 -L/usr/local/packages/gcc-3.2/lib/sparcv9" ./configure

Hi folks, I'm trying to call an R function (fisher.test) in my program for like a billion times! Though my program is in Python and I feel that using rpy2 to interface R to python doesn't give me satisfactory performance. So I looked into R code and found out that fisher.test is actually a wrapper around another function called fexact which is implemented in C. Using Cython I managed to

I tried building R-1.6.1 under Mac OS X 10.2.2 and experienced the following build failure: <...stuff omitted...> cc1: warning: changing search order for system directory "/usr/local/include" cc1: warning: as it has already been specified as a non-system directory gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o ctest.so ansari.o chisqsim.o d2x2xk.o

A search of the archives did not reveal an answer: For basic tests of association, where one has no a priori knowledge of the form of the relation or of the distributions of the variables, rank correlation seems like a good start. Why is cor.test() with Kendall and Spearman options relegated to the ctest package, rather than in the base package? Does this suggest that the developers consider

Dear R-users: I am runing R 1.6.2 with Windows XP. I try to calculate Pearson correlation and Spearman correlation of any pairwise columns of 8000 x 80 data matrix with missing values and randomize the matix 1000 times and calculate this two correlations again. The code bellow for Pearson is working fine but for Spearman got the error bellow for randomized data matrix and R console is stop