similar to: rgl.Sweave not producing transparency in pdf plots with alpha

Hi, I am applying the following code to map pca loadings onto a 3d grid, my problem is this - the output only plots the spheres in the requested color (in this case "red") for the first argument. The sphere from the second argument appear as flat dark circles. Also the text3d() command only seems to work for a couple of the positions, with no text added in most cases. Could anyone offer

Hi R users and experts, I am interested in learning more about the use of 3D plots. Specifically, I want to add points and lines to a surface plot. And get the axes and labels plotted also. Here is what I have tried with an example data set : library(rgl) vol2 <- 2*volcano # Exaggerate the relief library(reshape) mvol2 <- melt(vol2) str(mvol2) # First, persp and persp3d plots do not succeed

Hello I have a problem on keeping the format when I export a matrix file with the write.table() function. When I import the data volcano from rgl package it looks like this in R: > data[1:5,] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 100 100 101 101 101 101 101 100 100 100 101 101 102 102 [2,] 101 101 102 102 102 102 102

Hi, I'm trying to follow the suggestions given by Deepayan Sarkar in this message: http://tolstoy.newcastle.edu.au/R/help/05/11/16135.html to plot 3-D points on a wireframe plot. The problem is that I keep getting a partly formed plot- with the colored lattice visible but no axis labels or additional points- with the error message "error using packet 1, 'x' and 'units'

Hello all, I’m trying to add some data points to a wireframe. X an Y axis are independent variables, Z axis is predicted probability. I’d like to add the original data points on which the predicted probabilities are based to the wireframe. I’ve followed some of the previous post on this but get stuck : ## first part yields the wireframe## setwd("C:/Temp") rnp <-

Hello List! I asked this before (with no solution), but maybe this time... I'm trying to project a surface to the XY under a 3d cloud using lattice. I can project contour lines following the code for fig 13.7 in Deepayan Sarkar's "Lattice, Multivariate Data Visualization with R", but it fails when I try to "color them in" using panel.levelplot. ?utilities.3d says there

Dear expeRts, I would like to add two points to a wireframe plot. The points have (x,y,z) coordinates where z is determined to be on the wireframe [same z-value]. Now something strange happens. One point is perfectly plotted, the other isn't shown at all. It only appears if I move it upwards in z-direction by adding a positive number. So somehow it disappears in the wireframe-surface

Hello, hopefully simple question, but I cannot find the answer. I need to change the color from the standard default. Still want the scaled colors, but need different colors for different graphs. Code is: wireframe(z ~ y*x, mat.df, drape = TRUE, zlab = list("Water mass error (%)",rot=92), zlim=c(-50,180), xlab = list("Resistance error

Dear list I'm having trouble with inverting color gradation. As seen in the "rgl" example, library(rgl) example(rgl.surface) I understand that I can assign colors to heights for each point. col <- colorlut[ y-ylim[1]+1 ] # assign colors to heights for each point However, I am now trying to assign inverted colors. (top colored green, and bottom colored gray). Is there any

Hi, I want to draw a figure similar to http://dsarkar.fhcrc.org/lattice/book/images/Figure_13_07_stdBW.png from http://lmdvr.r-forge.r-project.org/figures/figures.html (figure 13.7) . However instead of using a contour plot as a panel for the wireframe I want to use a levelplot. Can somebody help me with this? Thanks in advance for any help, Kind regards, Anton Bossenbroek

Thanks... I agree that the problem was explained in the documentation but I can't find a way to have axis() working even manipulating par("plt") or with graphics.reset = TRUE: - adding graphics.reset=TRUE does not allow axis() to be shown; - I see that par()$plt is involved but it is the not sufficient to explain why axis() works because if it is changed by hand, axes are not

>>>>> Marc Girondot via R-help <r-help at r-project.org> >>>>> on Mon, 24 Jul 2017 09:35:06 +0200 writes: > Thanks for the proposition. As you see bellow, par("usr") is the same > before and after the points() (the full code is bellow): > .... >> par("usr") > [1] -0.2500000 1.2500000 -0.1666667

Hi, I have a vectors x and z, for example, x <- 0:20 z <- round(runif(20,1,7)) y <- 0.5 and I want to display z as an image. However if I then call image() with a vector image(x,y,t(z),zlim=c(1,7),col=heat.colors(7),xlab="Year",ylab="Action",yaxt="n",xaxs="r",yaxs="r") then I get the error Error in image.default(x, y, t(z), zlim =

Buenas tardes, Podria por favor alguien ayudarme a descifrar por que no es posible ver la grafica 3D cuando se utiliza lattice? Ya se que algunas veces los duendes hacen de las suyas, pero no estoy seguro de que este sea el caso. He reiniciado R, cambiado a RStudio y utilizado XP, pero no pasa "nada". Mi sessionInfo() es: R version 2.14.0 Patched (2011-11-12 r57642) Platform:

Hi all,I had a question last week on asking for a function that will help me draw three different circles on x,y,z axis based on polar coordinates (Each X,Y,Z circle are coming from three independent measurements of 1-360 polar coordinates). It turned out that there ?is no such function in R and thus I am trying to write my own piece of code that hopefully I will be able to share. I have spent

Please look at what I see in your code below (run-on code mush) to understand part of why it is important for you to send your email as plain text as the Posting Guide indicates. You might find [1] helpful. [1] https://wiki.openstack.org/wiki/MailingListEtiquette -- Sent from my phone. Please excuse my brevity. On June 25, 2017 2:42:26 PM EDT, Alaios via R-help <r-help at r-project.org>

Hi All, Does anyone know of a function to plot a regression surface for two predictors? RSiteSearch()s and findFn()s have not turned up what I was looking for. I was thinking something along the lines of: http://mallit.fr.umn.edu/fr5218/reg_refresh/images/fig9.gif I like the rgl package because showing it from different angles is nice for demonstrations. I started to write my own, but it has

Hi all, I'd like to plot a set of data (x,y,z) as 3D-cloud, and add several line plots to the same 3D graph: Two questions: 1) How do I connect points to get a line? > cloud(z~x*y,data=d,zlim=c(0,1)) # works > cloud(z~x*predict(l),data=d,zlim=c(0,1),type="l") # type="l" doesn't Warning message: type = l not implemented, consider using

Thanks for the proposition. As you see bellow, par("usr") is the same before and after the points() (the full code is bellow): .... > par("usr") [1] -0.2500000 1.2500000 -0.1666667 1.1666667 > # if you remove this points() function, axis will show nothing. > > points(1.5, 1.5, type="p") > p2 <- par(no.readonly=TRUE) > par("usr")

Questions on image: 1) How can I put labels on the x and y axes? 2) How to tell it to use e.g. 32 grey levels (not some colour map)? 3) How to know what the legend is (i.e. each grey level = what z value)? Thanks very much for any help. BTW I was wondering if persp was on the To Do list. That would be great! Bill Simpson