similar to: Memoize and vectorize a custom function

Dear R-helpers, I would like to export hierarchical clusters e.g. fit <- hclust(d, method="ward") in the newick format write(hc2Newick(fit),file='hclust.newick') Searching for a possibility I found this solution in the package ctc (http://www.bioconductor.org/packages/bioc/html/ctc.html). However, neither from this site nor via CRAN it is possible to install the package.

Hi all, I am having a problem indexing one of my mailboxes using the solr fts backend in dovecot 2.1.12 For many mailboxes it works just fine, but on one mailbox I currently always get a panic. solr setup: Java: icedtea 6.1.11.5 Solr: 3.6.2 running in tomcat 7.0.32 Command to reproduce error: doveadm index -u my at user badmailbox I already noticed that there have been some solr backend fixes

Hi All; This problem has come about from trying to learn some of the review practices recommend by rOpensci. One of them is to use the package goodpractice. After installing goodpractice, it kept failing on my own packages which are under development, and I was concerned something was funny in my own , so I have a fork of the package rerddap, and I tested goodpractice on that. I get the

Hey all, I am running a Asterisk 1.2.9.1 with Sangoma A101 card, newest firmware, configured with a help from Sangoma Tech Support, running fine. It is connected to a PRI circuit split from Cisco MC 3810, which in turn is connected to a Converged T from CTC Communications. While Asterisk works fine and I can call in/out on my BV account, I am only able to dial in through CTC. I have spent

I am trying to setup Samba in a classroom so that a student's samba folder can be accessed via Windows by the student and the teacher. I have Samba working, but can only get the student access to the folder. How can I add another user or group to Samba so the teacher and student have full control over the folder? Thanks Tom

Hi, Is there a simple command for computing the standard error of a combination of parameter estimates in a GLM? For example: riskdata$age1 <- riskdata$age riskdata$age2 <- ifelse(riskdata$age<67,0,riskdata$age-67) model <- glm(death~age1+age2+ldl, data=riskdata,family=binomial(link=logit)) And we want to find the standard error of the partial linear predictor for

withr:::set_makevars() can give that error if the makefile named by the 'old_path' argument (default "~/.R/Makevars) contains more than one definition of a variable of the form 'name=value'. You can see what file it is reading and its contents by using the trace() function: trace(withr:::set_makevars, quote({ cat(old_path, "\n"); writeLines(paste0(" ",

Hello, I have configured puppet and puppetdb (storeconfig) with postgresql and the service run and the collecting are good for example: I can make query with the next command and responds ok . [.........................] [root@master]# curl -X GET -H ''Accept: application/json'' http://127.0.0.1:8080/v2/facts --data-urlencode ''query=["=", "name",

Hello R-help. I am trying to make a stacked barplot where the color of the sections of each bar depend on another variable. > myData[1:11,] score percent marker cellType Malignant 1 0 100.00000 ESR1 (ER) Bladder.M(5) TRUE 2 0 80.00000 PAX8 Bladder.M(5) TRUE 3 1 20.00000 PAX8 Bladder.M(5) TRUE 4 0 100.00000 ESR1 (ER) Brain.N(3) FALSE 5 0

Dear R-users, I would like to use Cluster 3.0 for my data because of its zooming, link out and copy (gene)labels into clipboard options. Unfortunately the program doesnt allow use of the distance metrics I would like to use. I would like to ask if there is some library, that allows saving dendrogram object in the format readable by Cluster. Thank you for reply. --

Hi Everyone, I have a dataset like this mean sd 0% 25% 50% 75% 100% n BODY TEMPERATURE 36.41099 0.4015699 35.1 36.22222 36.5 36.66667 37.1 89 DIASTOLIC BLOOD PRESSURE 73.60079 9.4656186 50.0 67.00000 73.0 80.00000 95.0 253 HEIGHT 171.94000 9.2011670 153.5 166.50000 173.0 176.25000 190.0

Hi R helpers... I am having troubles because of the discrepancy between the dendrogram plotted from hclust and what is wrote in the hc2Newick file. I've got a matrix C: > hc <- hclust(dist(C)) > plot(hc) with the: > write(hc2Newick(hc),file='test.newick') both things draw completely different "trees"... I have also tried with the raw distance matrix D and

Last week someone in my localnetwork "abused" from our link, making everything slow... So I want to put the current Linux router as a traffic shaper. The setup is: +--- 128Kbit | "International" Local net --- [Linux router with ] -- ISP -- [magic routers]

Hi, That''s a bit off topic but since I use Spork + Rspec... Well, my classes are reloaded between each test wave so Rails'' "memoize" method raises an error (which is expected, see code: http://rubydoc.info/docs/rails/3.0.0/ActiveSupport/Memoizable:memoize) Anyone resolved this issue with an elegant solution?

Dear R-users, I am trying to reshape the DF "dat2" in the "long" format, but can't figure out how to use the "split"-option: > dat2 a.1995.z b.1995.z a.1996.z var 1 100.00000 100.00000 100.00000 Neue Anlagen insgesamt 2 40.09904 23.60890 40.88960 Neue Ausr??stungen 3 59.90096 76.39110 59.11040 Neue Bauten This

Maybe this is because I''m missing something but it seems to me that asking users of a memoized method to know when the method needs to be reloaded is a bit backwards. To me it seems like whoever is messing with something that affects the results of the memoized function should be the one that after doing its work should call something like memoized_method(:reset). Thoughts? -- You

This patch fixes an issue with protected methods becoming public if they are memoized. Looking for +1''s and/or a commit by core... https://rails.lighthouseapp.com/projects/8994-ruby-on-rails/tickets/5695 Thanks. -- You received this message because you are subscribed to the Google Groups "Ruby on Rails: Core" group. To post to this group, send email to

qemu feature detection takes about 95ms on my laptop. The overhead is almost all due to the time taken by the glibc link loader opening the 170+ libraries that qemu is linked to (×2 because we need to run qemu twice). Fixing that is seriously hard work. Therefore memoize the results of guestfs_int_test_qemu. This is keyed on the size and mtime of the qemu binary, so if the user changes the

Puppet 3.3.1 // CentOS release 6.4 (Final) rpm -qa | grep puppet puppetlabs-release-6-7.noarch puppet-3.1.1-1.el6.noarch puppetdb-1.3.0-1.el6.noarch puppet-server-3.1.1-1.el6.noarch puppetdb-terminus-1.3.0-1.el6.noarch Installed from yum packages: Running Transaction Installing : puppetdb-1.3.0-1.el6.noarch

Hi I am trying to use tree() to classify movements in a futures contract. My data is like this: diff dip dim adx 1 0 100.00000 8650.0000 100.00000 2 0 93.18540 2044.5455 93.18540 3 0 90.30995 1549.1169 90.30995 4 1 85.22030 927.0419 85.22030 5 1 85.36084