similar to: installing R 2.14.2

I'm new to R and trying to use the ggm package and I get the following message: > library("ggm", lib.loc="/Library/Frameworks/R.framework/Versions/3.0/Resources/library") Loading required package: graph Error: package ‘graph’ could not be loaded In addition: Warning message: In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : there is no

Dear R help Don't really understand if there is graph or should be graph. > library(ggm) Loading required package: graph Error: package ?graph? could not be loaded In addition: Warning messages: 1: package ?ggm? was built under R version 2.15.3 2: In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : there is no package called ?graph? G

Hello, I am beginner user of R. I am trying to use GeneNet package. I started by the example on this link: http://strimmerlab.org/software/genenet/download/arabidopsis-net.R However I am getting an error at this line:system("fdp -T svg -o arthdyn.svg arthdyn.dot") # SVG format sh: fdp: command not found I tried to search how to intall the fdp command but could not find explanation. I am

Dear all, I'm writing my manuscript to publish after analysis my final data with ANOVA, ANCOVA, MANCOVA. In a section of my result, I did correlation of my data (2 categirical factors with 2 levels: Quantity & Quality; 2 dependent var: Irid.area & Casa.PC1, and 1 co-var: SL). But as some traits (here Irid.area) are significantly influenced by the covariate (standard length, SL), I

I'm trying to write code to calculate partial correlations (along with p-values). I'm new to R, and I don't know how to do this. I have searched and come across different functions, but I haven't been able to get any of them to work (for example, pcor and pcor.test from the ggm package). In the following example, I am trying to compute the correlation between x and y, while

I am a new user of the function sem in package sem and lavaan for structural equation modeling 1. I don?t know what is the difference between this function and CFA function, I know that cfa for confirmatory analysis but I don?t know what is the difference between confirmatory analysis and structural equation modeling in the package lavaan. 2. I have data that I want to analyse but I have some

Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong? many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror:

Hi all, Can anyone help me setup this package so I can use it. I am getting errors with the Rgraphviz package and have tried a number of ways to get this to work. Any help will be greatly appreciated! I am sorta new to R but have been actively trying to get into using it as my main analysis software. Thanks, Brock [[alternative HTML version deleted]]

Dear R experts, I was just wondering why R is not picking up the order that I am putting in. Total ordering is the first argument of the sinDAG function from the package 'SIN'. Description of sinDAG This function computes the matrix of simultaneous p-values for SIN model selection for acyclic directed graphs (DAGs). SIN assumes that a total ordering of the variables is available (e.g.,

Is it intended that the first suffix can no longer be blank? Seems to be caused by a bug fix to merge in R 2.15.0. $Rdevel --vanilla DF1 = data.frame(a=1:3,b=4:6) DF2 = data.frame(a=1:3,b=7:9) merge(DF1,DF2,by="a",suffixes=c("",".1")) Error in merge.data.frame(DF1, DF2, by = "a", suffixes = c("", ".1")) : there is already a column

Forgive me if I'm posting to the wrong place....It's my first time posting. Here's the situation: I'm using the sem package and making path diagrams using path.diagrams. Suppose I have the following code: #install.packages("ggm") require(ggm) cor = rcorr(7) nm = c("SOF", "IWF", "PWF", "FSC", "FSF", "EF",

Hello, I am trying to use R for propensity score matching in SPSS.? I have version 21 of SPSS and I downloaded R 2.14.2 as directed as well as the R Essentials plug-in.? I have run a test for R and it appears to be running correctly.? I then downloaded psmatching3 and have tried to use the PS matching dialog in SPSS.? However, I continue to run into problems as SPSS reports that there is no

I've just updated to the latest R (2.14.2) on my Ubuntu Lucid box, and now the ggplot2 installed as a .deb package fails to work. $ R -e 'library(ggplot2)' Error in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : package ?proto? does not have a NAMESPACE and should be re-installed Calls: library -> .getRequiredPackages2 -> library Execution

Hello, I'm new to R, and have a problem related to spss integration with R (but is actually related to the R installation): I have windows 8, 64bit, and installed R 2.14.2, and then the R plug in for spss (spss version 21). When I tried to run somthing in spss, I got the following error messgae: Error in loadNamespace(i, c(lib.loc, .libPaths())) : there is no package called

Dear People I can't figure out how to fix this problem: rgl won't run under R 2.14.2 (it was working for me before under 2.14.0). The error message is: > library(rgl) Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/

Dear R-help, I recently upgraded from R 2.13.1 to R 2.14.2 and now get warning messages when plotting after using x11(). Example: > plot(rnorm(10)) ### no warnings > x11(); plot(rnorm(10)) Warning messages: 1: In axis(side = side, at = at, labels = labels, ...) : Font family not found in Windows font database 2: In axis(side = side, at = at, labels = labels, ...) : Font family not

Dear list, My code runs on 2.14.1 smoothly (with no error) but makes R crash on 2.14.2 and 2.15.0 with the usual windows message about "R for windows GUI front-end has stopped working..." and as such I dont have any access to R to get any error or warning message (if any). It crashes on random parts of the code any time that I run it. The code consists of EDA and spatial regression and

Hi listeRs, Maybe I have missed something, but I am facing a problem I don't understand even after reading archives and manuals (…maybe not carefully enough !) : On my PC (64-bit OS, Intel Xeon CPU , two L5506@2.13 GHz processors, 12 Go RAM) under Windows 7 SP1, I run both 32-bit (i386-pc-mingw32/i386) and 64-bit (x86_64-pc-mingw32/x64) version 2.14.2 (2012-02-29) of R, packages

Hi! A week ago I had a blocked icecast server because of the open files. I read some posts about the 1024 fd limit but this is not the case. My stations rarely has 300 listeners. From the log I can see that around 3PM I had 7 listeners on a mount and 35 on another one. Then, suddenly the only line written to the log is [2013-02-13 15:59:06] WARN connection/accept_client accept() failed with

On 9 Apr 2002, George Michaelson <ggm@apnic.net> wrote: Please read this first: http://www.eyrie.org/~eagle/faqs/questions.html > I am using rsync to pull maildrop boxes to a laptop. > > when I do this, I really do want to zero/delete the file > afterward. > > I use rsync because its a lowest common denominator, and its fast > and reliable. > > But, I have