similar to: Using Sweave to generate multiple documents

Depending on an R computation I would like to include an Sweave documents in the main Sweave document. How can I do it? So I was thinking .... to use Latex features : \newif\ifpaper \ifpaper \SweaveInput{"my1.Rnw"} \else \SweaveInput{"my2.Rnw"} \fi But how do I set paper to true or false given an \Sexpr ?? \papertrue % or \paperfalse Any ideas? cheers -- Witold

Hello everyone. I am in the process of writing a book in Latex with Texshop, on Mac. This book contains a lot of R code, hence the need to use Sweave. I was able to compile Rnw files, and to sync back and forth from the pdf to the source Rnw. My problem now is that the book is divided in Chapters, and every chapter is in its own Rnw file. I can compile them from the main one (book.Rnw) using the

Sorry, I should have really started a new thread with this because really it is a new question only loosely related to the first Q. Thanks for the assist. As suggested I switched over to sweave. I have a lot of .tex tables that I > have already created that I was previously inserting into my tex document > (using \input). The journal I plan on submitting to eventually wants the >

Hello! I was just wondering if Sweave can work with \input or \include LaTeX commands. So, is it aware of such a possible hierarchy in documents. I would test that, but I don't have such a report available at the moment. I thought of that when I was writting shell script for Sweave from command line and I have solved that part there. -- Lep pozdrav / With regards, Gregor GORJANC

Hi, Is there a way to turn off the automatic inclusion of "./" at the beginning of a path specified in an \SweaveInput{} instruction? I'd like to create some reusable "template modules" of Sweave code and put them in a standard directory like /Resources/Affymetrix Then the corresponding file that uses one of these would include a command like

Hi list, I was running Sweave on one of my .rnw file.? Everything was fine, until I came back from the vacation.? Nothing changed (at least to my knowledge), but now I have this problem: >???? Sweave("myfile.rnw") Error: ?COLO001final.rnw? is not ASCII and does not declare an encoding After snooping around on the web, I found this solution: > Sweave("myfile.rnw",

Dear all, I have trouble with R-beta sweaving files that include definitions with \SweaveInput in combination with keep.source = TRUE Symptom: SInput is taken from too far down the input file (the shift is the number of lines of the included file). Is that known? Searching didn't turn up anything, yet I think there are more people than just me using keep.source. Example: $

Hi, Maybe I'm missing the point here...but let's suppose you are working with "large" data sets and using functions that take a significant amount of time to run in R. I woulnd't like to run these functions every time I call Sweave("myfile.Rnw") within R. What is the "common" practice to use Sweave in these situations. I would just run the function once,

I am working with Sweave and would like to print out into my latex document the result of the R command version$platform So what I first tried in my .Rnw document was \Sexpr{print(version$platform)}. However, the output from this command is the string "x86_64-apple-darwin10.8.0" (without the quotes). This contains an underscore, which is a special character in tex and so I get an error

I am trying to learn the basics of Sweave so I read some things and a friend gave me his Rnw file to play with. I am able to do R CMD Sweave mark-example.Rnw. That works. But, then when I do latex mark-example.tex, I get the message below. I looked in the archives and Martin Morgan mentioned something in 2004 in terms of making sure that latex is looking at where Sweave.sty is but I am unsure

Hello all, I've been able to use R very successfully to run simple statistics and generate the plots I require. I've been evaluating Sweave, and have hit upon a small problem that I don't seem to be able to workaround. Sweave runs very well for single file latex documents, but I have a complex thesis made up of several parts and chapters. These are arranged with a master latex file

Hello everybody out there using Sweave, There are some complicated SQL queries and laborous calculations against large data included as R code chunks using Sweave in my LaTeX document. These code chunks create graphs that do not change most of the time, but they are of course recompiled every time I run Sweave on my file for update of minor changes to the LaTeX text. Is there an option

Hi, is it possible to have non-Sweave vignettes(*) in inst/doc/ be listed under 'Downloads' on CRAN package pages? For instance, in my R.rsp package I have a inst/doc/report.pdf (part of the source *.tar.gz) that is not detected/listed. The PDF is not based on a Sweave vignette but an *.tex.rsp vignette that is dynamically created via inst/doc/Makefile. It is listed (*) BTW, can the

Sometimes you want to compute the physical size of a plot based on data. In R itself this is no problem. But is there a way to compute the values of height and width in S-weave, say: <<graph,fig=TRUE,height=xx,width=yy>>= where xx and yy are computed and not physically written in the document? Bendix ______________________________________________ Bendix Carstensen Senior

Dear guRus, I would like to loop over a medium amount of Sweave code, including both R and LaTeX chunks. Is there any way to do so? As an illustration, can I create a .tex file like this using a loop within a .Rnw file, where the "1,2,3" comes from some iteration variable in R? ################################################ \documentclass{article} \usepackage{Sweave} \begin{document}

Hi, I have a problem when checking the package 'probdistr' (on probability distributions). I got this warning * checking index information ... WARNING Vignettes with missing or empty \VignetteIndexEntry: [1] "probdistr-chi" "probdistr-contextra" "probdistr-discrete" [4] "probdistr-discrextra" "probdistr-exp"

Hi everyone, I am using package knitr, FIRST TIME. I don't have access to RStudio. Read through Yihui's page, didn't find it helpful. Stuck on terms Rnw, GFM (GitHub Flavored Markdown). Never used Sweave, so the reference is not helping. Is there a simple step-by-step example WITHOUT RStudio? My question: What is the procedure? The documentation explains the functions, but does

I have data that looks like this: > df1 group id 1 red A 2 red B 3 red C 4 blue D 5 blue E 6 blue F I want a list of the groups containing vectors with the ids. I am avoiding subset(), as it is only recommended for interactive use. Here's what I have so far: df1 <- data.frame(group=c("red", "red", "red", "blue",

Almost all of the coxme package and an increasing amount of the survival package are now written in noweb, i.e., .Rnw files. It would be nice to process these using the Sweave function + a special driver, which I can do using a modified version of Sweave. The primary change is to allow the following type of construction <<coxme>> coxme <- function(formula, data, subset, blah blah

Hi all, Using Beamer, in order to highlight a piece of R code I do something like this - note the "\structure" and "\alert" commands: \begin{semiverbatim} > mleOut <- \structure{dlmMLE}(Nile, + parm = c(0.2, 120), # initial values for optimizer + lower = c(1e-7, 0)) \alert<2>{# V must be positive} > mleOut$convergence