similar to: Read and show Bitmap Images

All - I'm creating some plots in R that I would like to overlay on images that are created outside of R. I've used "image" before to plot image-like data within R, and have added vector plots on top of them, but I can't find a way to read in an external bitmap file into R and use that. Currently the external files are .png's, but I could generate a few other types,

Hello all, has someone please a few hints about how to 1.st: draw an image (preferrably a jpg) and then 2nd: plot() on that image I am using a mac - and after searching and trying different ways (I have installed EBImage) I now would like to ask for help... Thanks! Johann

Dear all, I am looking for a function that can read a simple bmp file and return me a matrix with their corresponding values. I have already looked in the packages require(ReadImages) require(pixmap) and also did apropos("image") but I could not find something that can do something like that. I have also tried the read.ftable but it also failed. B.R Alex [[alternative HTML

Hello, Does anyone know of an R package that can read Windows BMP format images? Many thanks, Greg Jefferis. -- Gregory Jefferis, PhD Division of Neurobiology MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 0QH, UK. http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis

I am working on dumping raster data from R into PNG files using rasterImage(). I am working with a test matrix from the rasterImage() example and using it to produce a PNG image with the following code: # From the example for rasterImage(). A 3 pixel by 5 pixel b/w checkerboard. testImage <- as.raster(0:1, nrow=3, ncol=5) testImage [,1] [,2] [,3] [,4] [,5] [1,]

I am working on dumping raster data from R into PNG files using rasterImage(). I am working with a test matrix from the rasterImage() example and using it to produce a PNG image with the following code: # From the example for rasterImage(). A 3 pixel by 5 pixel b/w checkerboard. testImage <- as.raster(0:1, nrow=3, ncol=5) testImage [,1] [,2] [,3] [,4] [,5] [1,]

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis !

Many medical journals and publishers require that images, whether photographs or line art, be submitted as high resolution .TIFF images. One option for R users is to produce an image in one format and to convert it to a .TIFF file using a second software program. My experience has been that this option often results in images of poorer quality, often with blurry contours, and a loss of

Hello, Working with Windows 7 in a HP laptop with R-2.10.1 I download and installed ImageMagick-6.3.7.7-Q16-Windows-dll.exe and GTK 2.12.9-win32-2, then downloaded and installed from local file EBImage_3.2.0.zip and I got: > library(EBImage) Loading required package: abind Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hi, on a lattice, I have binary 0/1 data. 1s are rare and may form clusters. I would like to know the size/length of largest cluster. Any help warmly welcome, Sylvain.

Dear Sir/Madam, I am using R-Image in an MSc statistics dissertation and have found, in various EBImage manuals a functions - bwimage, which I would like to use, however I can't find it within my version of R. Could you tell me if the function has changed or what I need to do to be able to use it. Many thanks Alice [[alternative HTML version deleted]]

Hi, I am working on writing some S4 classes that represent multidimensional (brain) image data. I would like these classes to support standard array indexing. I have been studying the Matrix and EBImage (http://www.bioconductor.org/packages/1.9/bioc/html/EBImage.html) packages to see how this is done. When using objects of the "array" class directly, R distinguishes between the calls:

Hello, I've been having some trouble working with the aroma package and have realized that it's my ebimage is at the root of the problem. The package builds but during testing it fails because of an undefined symbol as seen below: installing to /usr/local/lib64/R/library/EBImage/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices **

Sorry I meant bwlabel on this message Alice --- On Wed, 24/6/09, aliceduggan@btopenworld.com <aliceduggan@btopenworld.com> wrote: From: aliceduggan@btopenworld.com <aliceduggan@btopenworld.com> Subject: bwimage To: r-help@r-project.org Date: Wednesday, 24 June, 2009, 12:34 PM Dear Sir/Madam, I am using R-Image in an MSc statistics dissertation and have found, in various

Dear all, I have asked yesterday of how I can read a simple bitmap file in R cran. I was suggest to use either readGDAL or raster for loading my bitmap a. I have done it with readGDAL like     store<-readGDAL(fname='lena256.bmp')     and it works,... but it converts my matrix-like notion of a bitmap to a large vector b. Raster also returns a class that I can not understand. So 1,

During vignette generation on Windows, Sweave seems to clean up before all graphics files are completely processed. For instance, if tmp.Rnw is: \documentclass[12pt]{article} \begin{document} <<>>= bitmap("afile.png") plot(1:100) dev.off() @ \end{document} Then: C:\R\tmp>R CMD Sweave tmp.Rnw Writing to file tmp.tex Processing code chunks ... 1 : echo term verbatim

Hi group, I've spent half a day trying to figure this out and searched through different forums. I've tried to load EBImage but am getting the following problem: >Error in inDL(x, as.logical(local), as.logical(now), ...) : > cannot initialize ImageMagick >Error: package/namespace load failed for 'EBImage' My path is like this: C:\\Program

I am having trouble using the "resize" function (in the package EBImage) with matrices containing double values. Let's say I have a matrix 'b' with these values:   > a = c(1.25,1.555,1.245,1.265,1.656,1.235,1.848,1.959,1.548,1.245454,1.989,1.24) > b = matrix(a,4,3) > b       [,1]  [,2]     [,3] [1,] 1.250 1.656 1.548000 [2,] 1.555 1.235 1.245454 [3,] 1.245 1.848

Dear R-help list members, I'm writing a package using tcltk. Thanks to Peter Dalgaard's excellent work on the tcltk package, almost everything has gone very smoothly. I'm stymied, however, by the following problem: I want to incorporate a bitmap image, stored as an xbm file, in a widget. To take a simple example, top <- tktoplevel() tkgrid(tklabel(top,

Hi, I have an S4 class directly derived from 'array' as shown in the code below (EBImage package of Bioconductor 2.1, devel), it simply contains array adding a couple of slots: setClass ("Image", representation (colormode="integer", filename="character", compression="character", resolution="numeric", features="list" ),