similar to: Problems compiling packages from source: can't find -lquadmath.

Hi, I am trying to install gee on our server but I get the error below. I do not have root on this machine so no control on how R was installed itself. It looks like it cannot find blas libs, the only ones i can find on the machine are: /usr/lib64/libblas.so.3 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0.3 and : $ R CMD config BLAS_LIBS

Apologies if this has been posted about recently, but I haven't been on this listserve for a while. I ran into a problem trying to compile Hmisc (required package for rms) and have found a solution that I'd like to share. The compile fails with the message: /usr/bin/ld: cannot find -lquadmath libquadmath exists on my Debian Squeeze system (up-to-date, recently installed): ldconfig -p

Updating my 1.8.0 R installation (>update.packages() ) I obtain the following (SORRY FOR THE LENGTH OF THE LOG BUT IT HELPS!!!): ................ downloaded 135Kb KernSmooth : Version 2.22-11 in /usr/lib/R/library Version 2.22-12 on CRAN Update (y/N)? y mgcv : Version 0.9-3.1 in /usr/lib/R/library Version 0.9-6 on CRAN Update (y/N)? y trying URL

Dear R-helpers, Christoph (author of phyloclim) and Luke (author of tkrplot), I would like to get your helps on installing of phyloclim in Ubuntu linux. It seems a package named 'tkrplot' could not be installed at firstly, then packages depends on it could not be installed latter. As I have tested, installation of phyloclim works smoothly in Mac. I attempted to install these packages in

Hello, I'm using R 1.40 on MacOS X X.1.2 (installed via the fink package manager). To upgrade my installed packages, I tried to use update.packages() today. All went well for most packages, with the exception of KernSmooth and cluster. In both cases, libraries were not found although I think they are present. Here's what happened: ---------------------------------- >

I always followed http://cran.r-project.org/bin/linux/ubuntu/ to install R on Ubuntu 8.1. I had no errors before! > install.packages("XML") Warning in install.packages("XML") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

Hi, After loading R 4.0.0 on Ubuntu 20.04. R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()'

Dear all yesterday I got around to install R-1.5.1 on my machine at home which, admittedly, is running a very old version of RedHat Linux. I noticed two things: 1) My pdflatex version is too old to produce the pdf version of the manuals. `./configure' checks whether a recent version of makeinfo is installed and tells you whether you can produce the info version or not. (I was told I

On Tue, Feb 13, 2018 at 12:22 PM, Indrajit Sen Gupta <indrajitsg at gmail.com> wrote: > Hi Avraham, > > I tried with the patched version. The same error message. > > gcc -std=gnu99 -m64 -shared -s -mwindows -o R.dll R.def console.o dynload.o > editor.o embeddedR.o extra.o malloc.o opt.o pager.o preferences.o psignal.o > rhome.o rt_complete.o rui.o run.o shext.o

Dear R People: I am attempting to install SparseM on R 2.15.0 on a Linux 11.10 system. Here is the output > install.packages("SparseM",depen=TRUE) Installing package(s) into ?/home/erin/R/x86_64-pc-linux-gnu-library/2.15? (as ?lib? is unspecified) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

Hi all, I tried to load a package which includes a shared object on one of my Macs, and I got an error message below, which suggests that the file " libquadmath.0.dylib" is missing in the /usr/local/lib folder. On my other Mac however, I have no problem loading the package, and the file " libquadmath.0.dylib" is in the /usr/local/lib folder. I wonder where this

Hello, I'm making a compiler utilizing LLVM. Because I want the compiler to support 128bit floating-point operations, I added the code for 128bit floating-point operations and tested these operations in i686, x86_64, SPARCv8 and SPARCv9 machines. Generated codes by LLVM operated normally when using x86_64, SPARCv8 and SPARCv9 machines, but generated codes in a x86 machine produce wrong

Installing odesolve in Raqua 1.8.0 or 1.8.1 under MacOSX gives the following message: Warning message: Installation of package odesolve had non-zero exit status in: install.packages(ui.pkgs, CRAN = getOption(where), lib = .libPaths()[1]) Moreover, in the source of odesolve is no makefile. Does anyone know how to get a proper installation? Maartje

In the file MkRules.local.in, I see the line: USE_ATLAS = NO which I believe needs to be changed to YES. But how do I specify the BLAS file *libopenblas_haswell-r0.2.20.a *and its location? Regards, Indrajit On Tue, Feb 13, 2018 at 6:41 PM, Indrajit Sen Gupta <indrajitsg at gmail.com> wrote: > I was able to compile the R from the github by running build-r-devel.bat! > > Now need

Bonjour, Je cherche à installer le package odesolve du logiciel de statistique R sous Ubuntu Linux. C'est un package qui contient des fonctions appelant du code en Fortran. A l'installation sous R via le shell, j'obtiens l'erreur suivante: Hi, I tried to install odesolve package of R under Ubuntu Linux. But I got the following error: ghislain@ghislain-laptop:~$ sudo R [sudo]

Dear list, This is my first time trying to set up the development version of R (R-devel ) in my local machine to test some packages before submitting them to CRAN. I'm using Linux Mint 17.1 64-bit, which is an Ubuntu-based distro. However, I'm not able to correctly set up r-devel, apparently due to a problem with enabling the shared library support. I run the first script given by Dirk

Hi, I am trying to compile R with ICU support. I am following https://cran.r-project.org/doc/manuals/R-admin.html#Building-from-source I have downloaded and extracted https://www.stats.ox.ac.uk/pub/Rtools/goodies/ICU_531.zip to W:\R-3.5._\App\R-Portable\ICU I have modified MkRules.local # set to use ICU USE_ICU = YES # path to parent of ICU headers ICU_PATH = w:/R-3.5._/App/R-Portable/ICU I

I am having trouble of compiling R 3.0.2 with MKL 11.1.0.080; tried the following resources: http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor http://cran.r-project.org/doc/manuals/R-admin.html#MKL http://software.intel.com/en-us/comment/reply/328415 and getting the following: *checking for dgemm_ in -Wl,--start-group -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -Wl,--end-group

Dear All, I am trying to compile R-3.0 on Cray xe6 (HLRS) HERMIT, no success so far. Here is my experience: I use this to configure and make R: CC="cc" \ CXX="CC" \ F77="ftn" \ FC="ftn" \ CPPFLAGS="-I$PREFIX/include" \ LDFLAGS="-L$PREFIX/lib${LIBDIRSUFFIX}" \ ./configure --prefix=$PREFIX \ --exec-prefix=$PREFIX \ --bindir=$PREFIX/bin \

Hi, I have R installed from the Ubuntu PPA and a local build of R (more details below). I will refer to these as "R" and "R-devel", respectively. I've reproduced the following on Ubuntu 13.10 and 14.04. Below is an example (which requires the bootstrap package) that takes 10 seconds for me to run with R-devel and 5 seconds with R library(bootstrap) str(tooth) theta <-