similar to: haplo.stats version 1.5.2

Re-sending this from 10/7. Please help! I'm really clueless how to fix this: System: Solaris 7, Software: R_1.7.1 for unix > R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz -works like a charm-- no syntax errors, etc But problems are when I'm loading the library within R. > library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library") > Error

I am on Solaris 7, using R_1.7.1 developing packages for both Splus and R. We have a working R-package for haplo.score and now converting to haplo.stats. R CMD INSTALL -l /people/biostat3/sinnwell/Rdir/library haplo.stats_1.1.0.tar.gz works like a charm-- as comparable to our working version of haplo.score. But problems are when I'm loading the library within R. Within my package I have

We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system

I've just uploaded an R version of Daniel Schaid's 'haplo.score' library (from http://www.mayo.edu/statgen/) to CRAN. >From the DESCRIPTION file: [haplo.score is a] suite of routines that can be used to compute score statistics to test associations between haplotypes and a wide variety of traits, including binary, ordinal, quantitative, and Poisson. These methods assume

Dear colleagues, I face a problem doing haplotype analyses with haplostats: when I use the haplo.em function, the programme gives an error message because of 'recursive default argument reference.' I am not able to figure out what this means. Could you perhaps help me? The full output is the following: > library(haplo.stats) >

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Full_Name: Eric Lunde Version: 2.0.1 OS: Solaris 9 Submission from: (NULL) (129.176.151.21) Hi R Devel, I am assisting one of my fellow R users who is developing a package for both Splus and R. He has been using the Sd2Rd command to convert his sgml help files into Rd help files. We believe we have found a bug. We noticed that if an sgml help file has multiple <s-topic> tags, each of

Hi, Anybody knows a function that can fit haplotype data to a Cox model. I've been searching it in the web without succeed. I use "haplo.stats" package, but unfortunatelly it's not possible to analyse survival data, amb I right?. Thanks in advance. Isaac Subirana (isubirana@imim.es) [[alternative HTML version deleted]]

Sehr geehrte Damen und Herren, hiermit m?chte ich bei Ihnen nachfragen, ob die f?r Splus geschriebene "haplo.score"- Funktion auch unter R verwendet werden kann. siehe http://www.mayo.edu/statgen/software/ Wenn ja, wie sind die Aufrufe Splus CHAPTER -m und Splus make in R zu realisieren? Herzlichen Dank f?r Ihre M?he mit freundlichen Gr??en -- Dr. rer. nat. Andreas Fr?hlich

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

Hi all, I've been looking in R for an EM algorithm adjusted for multiple-locus haplotypes frequencies, but failed in 100%. Has anyone heard of anything of this kind in R? Thanks in advance, Marcin

Using R 1.8.1 on Solaris Developing an Splus and R package from the same files. Creating an alias for multiple functions to the same file in .sgml: <s-topics> <s-topic> my.function </s-topic> <s-topic> print.my.function </s-topic> </s-topics> using R CMD Sd2Rd would convert to: \name{my.function} \alias{my.function} \name{print.my.function}

Dear useRs- I am developing a package that uses output from stand-alone unix software programs. I use multiple perl scripts to process the output and make it ready for reading into R. I would like to keep the perl scripts in the designated place for such files, exec/, but I can't find how a user is supposed to be able to use those when using the library. R-exts 1.1.4:

Dear useRs: We would like to introduce the "pedgene" package, version 1.2, available now on CRAN, with a brief manual available as a vignette: http://cran.r-project.org/web/packages/pedgene/index.html The pedgene package performs gene-level kernel and burden association tests with disease status and continuous response for pedigree data, as described in our recent paper: Schaid, D.

Dear useRs: We would like to introduce the "pedgene" package, version 1.2, available now on CRAN, with a brief manual available as a vignette: http://cran.r-project.org/web/packages/pedgene/index.html The pedgene package performs gene-level kernel and burden association tests with disease status and continuous response for pedigree data, as described in our recent paper: Schaid, D.

Several of us locally are puzzling over the following problem: We have a central repository of R packages on our linux system. Occasionally, we'd like to install a different version of the same package (such as making updates to the survival package before it is released to the larger group, or a downloaded beta version). When using the library function, it appears that lib.loc is not

Hi, My query is regarding permutation test and reshuffling of genotype/phenotype data I have been using the haplo.stats package of R. for haplotype analysis and I would like to perform an analysis which I'm requesting your advice. I have a data set of individuals genotyped for 12 SNP and a dichotomous phenotype. At first, I have tested each of those SNP independently in order to bypass

Hi All, is there any chance of vectorising the two ifelse() statements in the following code: for(i in gp){ new[i,1] = ifelse(srow[i]>0, new[srow[i],zippo[i]], sample(1:100, 1, prob =Y1, rep = T)) new[i,2] = ifelse(drow[i]>0, new[drow[i]>0,zappo[i]], sample(1:100, 1, prob =Y1, rep = T)) } Where I am forced to check if the value of drow and srow are >0 for each line... in

Hi all, Hope someone can help me. I start out with a matrix called haplo with 600 rows and two columns. To start with, the elements of the matrix are character strings of 20 numbers. I then want to create separate objects, called ha1-ha600, that are the concatenated 20 + 20 numbers, as numeric. I am having no trouble doing anything except getting the index i to paste to the object ha(i) in