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Dear R-helpers, I'm running Sweave() on a file. First run: > Sweave('20080331.Rnw') Writing to file 20080331.tex Processing code chunks ... 1 : term hide (label=setup) 2 : echo term verbatim (label=oatvar) 3 : echo term verbatim (label=oatvar1) 4 : echo term verbatim (label=oat2wt) 5 : echo term verbatim (label=oat2wt) 6 : echo term verbatim (label=lm) 7 : echo term

odfWeave is throwing up a cryptic error, after successfully processing a file with a large number of figures (~30) and many \Sexpr{} calls. The error is (at least to me) cryptic. I am not sure where to look to correct this problem. Here's the error: Post-processing the contents Error in .Call("RS_XML_Parse", file, handlers, endElementHandlers, as.logical(addContext), :

Harold, I've taken a closer look at your example and I'd call this an Sweave bug. It creates tempfiles each time you run it, and doesn't delete them at the end. For example: > list.files(tempdir()) character(0) > testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package = "utils") > Sweave(testfile, out="junk.tex")

This is great. Thank you for your help, but let me make sure I fully understand. Here is the looping file I use to subset the data frame, create a tex file, and Sweave it. This results in N number of tex files where N is equal to the number of rows in the data frame. list <- unique(wide$stuid) master = "master.tex" for (i in list){ tmp1 <- subset(wide, stuid==i) tmp2

I try Sweave and get Sweave-test-1.tex but hot to run LaTeX on 'Sweave-test-1.tex'? I am using WinEdt. thanks, Aimin > Sweave(testfile) Writing to file Sweave-test-1.tex Processing code chunks ... 1 : print term verbatim 2 : term hide 3 : echo print term verbatim 4 : term verbatim 5 : echo term verbatim 6 : echo term verbatim eps pdf 7 : echo term verbatim eps pdf

Hi everyone, Does R support DOE (design of experiment) matrix generation? I want to do DOE matrix generation using fractional factorial and central composite but don't know if R has some package for doing them. If yes, then what package or function should I use? Thank you so much in advance Hien-Trinh Dao -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help

This message is in MIME format. Since your mail reader does not understand this format, some or all of this message may not be legible. ------_=_NextPart_000_01C3BE9C.3FB5BC1A Content-Type: text/plain; charset="iso-8859-1" There is a small bug in the implementation of \preformatted in R 1.8.0: The closing "\end{verbatim}" needs to be followed by a newline, since my latex

Hello, in a Rnw-file I have this used stuff to try out tex-results... ============================== <<>>>= texme <- function() cat( "{\\bf Hallo, das ist voll fett!}\n" ) @ <<results="verbatim">>= texme() @ ============================== I used this command: "R CMD Sweave example.Rnw" and got this error:

Hello, I am trying to start using Sweave. I copy the example from help Sweave testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package = "utils") ## enforce par(ask=FALSE) options(device.ask.default=FALSE) ## create a LaTeX file Sweave(testfile) ## This can be compiled to PDF by tools::texi2dvi("Sweave-test-1.tex", pdf=TRUE) and I

Max & Friends, I've run into a problem with odfWeave 0.7.5 running under R 2.7.1 (Windows XP, SP2) doing some monthly production reports. Under 2.7.1 I'm getting various parsing errors after Sweaving starts, e.g.: Sweaving content.Rnw Writing to file content_1.xml Processing code chunks ... Error in parse(text = cmd) : unexpected input in "" > Above case works

Hi: I'm still trying to figure out how use Sweave. Trying the example below I get the error message when texi2dvi is executed. Any ideas about how to make texi2dvi work? library(tools) > testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package = "utils") > options(device.ask.default=FALSE) > Sweave(testfile) Writing to file Sweave-test-1.tex

I'm trying to (re)learn Sweave and run into some problems. I use now ubuntu (8.10), emacs + ess. Slowly getting upto speed on ess. I have a complete (hopefully) .Rnw file, but the resulting .tex will not compile. The file does not contain anything exotic, but it produces pdf figures, and that is where the problems come: library(tools) > Sweave("varioCoo.Rnw") Writing to file

Hi Seth, The possibility of caching computations would be a great boon when one is iteratively refining a paper; so I'm most grateful for your work on this. Unfortunately I have a problem to report: ******************installing****************** > source("http://bioconductor.org/biocLite.R") > biocLite("weaver") Running getBioC version 0.1.8 with R version

I have downloaded a file that I don't know how to describe correctly. It contains R code and Latex, and I should be able to reproduce an analysis by running an R script in this folder. There is a line in the R script: junk <- system(paste("/usr/texbin/pdflatex ",latexFiles[i1]), intern=TRUE) that needs to be modified to run on my computer. I use WinEdt with

Sorry, I forgot to include a reproducible example on my last e-mail but here it is: Since the file is large to be included here: The path to the foo.Rnw examples is: www.stat.umn.edu/~charlie/Sweave/foo.Rnw and is suppossed to produce a pdf like this one: http://www.stat.umn.edu/~charlie/Sweave/foo.pdf I have downloaded MiKTEX but I don't know how to make it work. Sweave and Stangle seem to

Hi list, I was using Sweave and was wondering if anyone has had any luck changing the font colors of the code chunks. For instance, in my .Rnw preample I tried including: === \usepackage[usenames]{colors} \definecolor{darkred}{rgb}{0.545,0,0} \definecolor{midnightblue}{rgb}{0.098,0.098,0.439} \DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,formatcom={\color{midnightblue}}}

Hi, I recently compiled 1.6 on NT4 but I am having a problem with Sweave. Using the inbuilt 'Sweave-test-1.Rnw' file as an example: ------- > library(tools) > testfile <- file.path(.path.package("tools"), "Sweave", "Sweave-test-1.Rnw") ## create a LaTeX file Sweave(testfile) testfile <-

Using Latex and the beamer class, I would like to highlight code snippets. Does anybody know a suitable 'preprocessor' or 'filter' for R (and/or C/C++) code ? I have been including it in simple \begin{verbatim} ... \end{verbatim} and I know there is a better way -- in fact I saw it used a while back in some package I looked at. And I didn't write that down... What I am

Hi there: I'm preparing a report in RStudio 0.96.330 on a Mac OS. I'm running R 2.15.0 I understand from Ross Ihaka's document (http://www.stat.auckland.ac.nz/~stat782/downloads/Sweave-customisation.pdf) that you can modify the line length of Sweave output by a call to options(wdith=x). This works great for me for numeric output, but not for character vectors that I have to print.

Dear all, There seems to be a problem with named chunks in Sweave with the version of R under development (downloaded yesterday). When I sweave the file toto.Rnw described at the end of this mail (Ubuntu 10.04 LTS), the function Sweave returns an Internal error: > utils::Sweave("toto.Rnw") Writing to file toto.tex Processing code chunks ... 1 : echo term verbatim (label=a) 2