Displaying 20 results from an estimated 1000 matches similar to: "Rmpi installation problems"
2012 Aug 29
2
Problem installing Rmpi with Open MPI
Hi guys,
I've spent a few days trying to install Rmpi with no luck. I originally
tried using mpich, moved on to mpich2, and then to openmpi. I've gotten
the furthest with openmpi, though am still running into this problem and
can't figure it out. Can someone help!? Thanks so much in advanced.
I'm using an HP Envy laptop with Ubuntu 12.04. Output is below, with the
error at the
2011 Mar 07
1
Rmpi fails to install
I try to install Rmpi as root with install.packages("Rmpi").
It fails with:
...
checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO
C89... none needed
I am here /usr and it is OpenMPI
Trying to find mpi.h ...
Found in /usr/include
Trying to find libmpi.so or libmpich.a ...
Found libmpi in /usr/lib
checking for openpty in -lutil... yes
checking for main in -lpthread...
2010 Jan 20
0
R CMD INSTALL configure.args and CC customization
Hi, everybody.
I hope the new year is treating you well.
In a Rocks Cluster Linux system (that's Centos 5.2 based), I have
built R-2.10 and it runs well.
While fiddling with MPI libraries and R packages, I've noticed a few
little wrinkles.
This comes as no surprise to the veteran R programmers, but let me
share to the new guys the following gem:
There is a difference between . and -
2012 Nov 21
2
installing Rmpi on centos 6 with mpich
Hello everyone
im trying to install Rmpi library on centos 6. I have already installed
mpich2 1.4
[root@localhost ~]# R --version
> R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
> Copyright (C) 2012 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> Platform: x86_64-redhat-linux-gnu (64-bit)
[root@localhost ~]# mpich2version
> MPICH2 Version:
2012 Oct 10
1
Rmpi installation trouble
Dear R People:
I'm trying to install Rmpi (latest version) on Ubuntu.
However, I'm getting the following error:
erin at erin-Y480:~$ R
R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are
2009 Feb 06
2
Rmpi Segmentation fault
Dear all,
I have used the Rmpi package many times before however this time I've
installed it as I always do with openMPI tar.gz file direct from the
website. I'm installing on my ubuntu 8.10.
Linux 2.6.27-11-generic #1 SMP Thu Jan 29 19:28:32 UTC 2009 x86_64 GNU/Linux
All i get is:
> library(Rmpi)
Segmentation fault
:~$
Which dumps me back into the shell, and doens't give me much
2009 Aug 24
1
R with MPI
Hello, I plan to use R with my cluster with OpenMPI.
I need the packaged 'snow' and 'Rmpi' for that, however, I get an error
while downloading and installing them:
When I do a:
install.packages("Rmpi", dependencies=T)
I get this error:
checking for mpi.h... no
Try to find libmpi.so or libmpich.a
checking for main in -lmpi... no
libmpi not found.
2008 May 06
1
trouble installing Rmpi on 64-bit Ubuntu 8.04 with openmpi
Subject pretty much says it all. I am running 64-bit Ubuntu 8.04, i.e. Hardy
Heron, have openmpi installed, and get the following error message with
attempted install of Rmpi. sessionInfo() follows.
Mark
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
2011 Sep 09
1
R CMD INSTALL configure.args and CC customization
I am running into the following issue that has been previously
reported on the R-devel mailing list. The short version is that I'm
writing a package for MPI, and I'd like to change CC and SHLIB_LD to
"mpicc". Trying to change them in Makevars.in has no effect, because
the values are clobbered by /etc/R/Makeconf. Will the following
changes to Makeconf.in introduce any problems?
2011 Mar 14
1
Installing Rmpi on hpc
Hi,
I was trying to install the package Rmpi on a hpc cluster running SGE. The
command, and the sessionInfo() is as follows:
===========================================
> install.packages("Rmpi",dependencies=TRUE)
also installing the dependency ‘rsprng’
trying URL '
http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/rsprng_1.0.tar.gz'
Content type
2009 Mar 27
0
Installing Rmpi on Centos 5.2
I am trying to install the R package "Rmpi" which needs libmpi. I've
installed openmpi and lam in Centos 5.2:
[root at rab45-1 /]# rpm -qv openmpi
openmpi-1.2.5-5.el5
openmpi-1.2.5-5.el5
[root at rab45-1 /]# rpm -qv lam
lam-7.1.2-14.el5
lam-7.1.2-14.el5
I'm using this to install Rmpi:
R CMD INSTALL /home/rick/Rmpi_0.5-7.tar.gz
--with-mpi=/usr/lib64/lam/include
But I get the
2010 Apr 26
0
Rmpi installation problems on slave nodes
Hi guys,
I'm trying to install Rmpi on the slave nodes of my cluster. The
installation seems to work with no errors or warnings using this
command:
R CMD INSTALL --configure-args="--with-Rmpi-include=/usr/lib64/openmpi/1.3.2-gcc/include
--with-Rmpi-libpath=/usr/lib64/openmpi/1.3.2-gcc/lib
--with-Rmpi-type=OPENMPI" Rmpi_0.5-8.tar.gz
But when I attempt to load Rmpi I get the
2007 Jul 06
1
Rmpi installation
Hi R Gurus.
I'm trying to install the Rmpi package.
Here are the errors:
checking for stdint.h... yes
checking for unistd.h... yes
checking mpi.h usability... no
checking mpi.h presence... no
checking for mpi.h... no
Try to find libmpi or libmpich ...
checking for main in -lmpi... no
libmpi not found. exiting...
ERROR: configuration failed for package 'Rmpi'
** Removing
2007 Apr 24
1
Problem installing Rmpi with lam on SGI SLES9
Hi,
I've been trying here to install Rmpi on an SGI IA-64 machine with 64
processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and
lam-mpi 7.1.3. While I've read of similar problems on this list, I
think I've got an entirely new set of error messages to contribute
(see below). I'm not sure what the actual error is and what the @gprel
relocation message is about. Any help
2007 Oct 08
0
another try with Rmpi on Linux
Dear R People:
Here are my latest attempts for Rmpi:
This is the list of locations for mpi.h:
/home/faculty/hodgess/mpich2-1.0.5p4/src/include/mpi.h
/home/faculty/hodgess/include/mpi.h
/home/faculty/hodgess/lam-7.1.4/romio/adio/sgi/mpi3.1/mpi.h
/home/faculty/hodgess/lam-7.1.4/share/include/mpi.h
/usr/src/linux-2.4.21-20.EL/drivers/addon/fusion_20505/lsi/mpi.h
2009 Mar 27
2
Installing openmpi & lam for use with R
I am trying to install the R package "Rmpi" which needs libmpi. I've
installed openmpi and lam in Centos 5.2:
[root at rab45-1 /]# rpm -qv openmpi
openmpi-1.2.5-5.el5
openmpi-1.2.5-5.el5
[root at rab45-1 /]# rpm -qv lam
lam-7.1.2-14.el5
lam-7.1.2-14.el5
But I get the following error message when trying to install Rmpi:
/usr/bin/ld: skipping incompatible /usr/lib/lam/lib/libmpi.so
2007 Jul 23
1
Rmpi installation error
Hello everybody,
I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the
following error:
* Installing *source* package 'Rmpi' ...
Try to find mpi.h ...
Found in /usr/local/mpich-1.2.7p1/include
Try to find libmpi or libmpich ...
Found libmpich in /usr/local/mpich-1.2.7p1/lib
Try to find liblam ...
checking for main in -llam... no
liblam not found. Probably not LAM-MPI
2014 Mar 12
1
2 versions of same library loaded
Can anyone help me understand how I got 2 versions of the same library
loaded, how to prevent it, and what the consequences are? Running under
Debian GNU/Linux squeeze.
lsof and /proc/xxx/map both show 2 copies of several libraries loaded:
/home/ross/install/lib/libmpi.so.1.3.0
/home/ross/install/lib/libopen-pal.so.6.1.0
/home/ross/install/lib/libopen-rte.so.7.0.0
2007 Mar 28
4
Rmpi and OpenMPI ?
Has anybody tried to use Rmpi with the OpenMPI library instead of LAM/MPI?
LAM appears to be somewhat hardcoded in the Rmpi setup. Before I start to
experiment with changing this, has anybody else tried Rmpi with non-LAM MPI
implementations?
Dirk
--
Hell, there are no rules here - we're trying to accomplish something.
-- Thomas A. Edison
2007 Oct 08
0
shared object for Rmpi
Dear R yet again!
I finally got the Rmpi package to install! Yay!.
However, when I go into R to use it, there is an error with the dyn.load
file.
This should be simple (allegedly).
Please help.
Thanks,
Sincerely,
Erin
mailto: hodgess at gator.uhd.edu
/home/faculty/hodgess/R-2.6.0/bin
[hodgess at gator bin]$ ./R CMD INSTALL Rmpi_0.5-4.tar.gz