similar to: Wine app, can use Linux Java (JNI)?

Hi folks: I'm trying to update my JGR and related packages, but run into a compile problem, that I suspect must be affecting others. I get this output when compiling rJava, JavaGD, etc.: ## checking Java support in R... present: interpreter : '/usr/bin/java' cpp flags : '' java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server

Installing rJava fails consistently, whether installed via the command line as below, or through "install.packages( 'rJava' )", and whether 0.84 or 0.85 is used, with the message :- "checking JNI data types... configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to

Hi, I am unable to install the package rJava. I tried doing what the output suggests, but it doesn't help. How can I get R to find/recognize my Java installation? I am running R-2.15.0. waichler at snow> sudo R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_22 Java home path : /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre Java compiler : /usr/bin/javac Java

I want to call R functions from Java. I read a couple of forums that said to install package rJava in R. However I am not able to install rJava package in linux Ubuntu.I tried with two commands. One is install.packages("rJava") and another I downloaded the rJava_0.7-0.tar.gz file from R site. and gave the command R CMD INSTALL rJava_0.7-0.tar.gz. I got the followin Errors :- Warning

When I try to install rJava, I get the following error: > install.packages('rJava') ... checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags :

Dear all, I installed the amd64 cran2deb [1] JGR binaries on a fresh Debian testing, and JGR is missbehaving. When JGR starts up, one core of the CPU goes to 100% and stays there, even though I am keeping it idle and not performing any operation. I tried JGR with both sun-java6-jdk and openjdk-6-jdk, debian-liv:/home/liviu# update-alternatives --config java There are 4 choices for the alternative

Good afternoon, A strange one - library(rJava) works for root but not for user sean On 64-bit Ubuntu 9.10, using R as root (sudo -i), I can say library(rJava) and it works fine with no error message of any kind. But logged in as myself user "sean", it can't start... sean at SeansPC:~$ R --no-save --vanilla R version 2.10.1 (2009-12-14) Copyright (C) 2009 The R Foundation for

Hola buenas, utlimamente estoy teniendo más problemas con mi equipo de los que debería. Bajo windows no me funciona bien Rstudio y bajo linux soy incapaz de instalar rJava. ¿Alguien que sepa de Linux me podría ayudar? He probado a instalar los openJDK y nada. También he probado, para instalar Java, a hacer un: sudo add-apt-repository ppa:webupd8team/java sudo apt-get update && sudo

Hi, I would like to test the new package RGG (R Gui Generator). This package requires the installation of several other package. One of them is rJava. I installed sun-java6-jdk and run the R CMD javareconf but the installation still fails ! Do you have any ideas ? * Installing *source* package ‘rJava’ ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file

Hi all, I am new to Xapian and want to use it with Java. In order to do that I tried to compile the Java bindings. I set XAPIAN_CONFIG and invoked "configure". However "./configure --with-java" exits with an error. Point of failure: checking for jni.h... no checking for jni.h in /usr/lib/jvm/java-1.5.0-sun/include... no checking for jni.h in

Esteemed useRs and Devs, Attempts to update package:rJava to the latest version have failed. See my code and output below. Notably, as suggested here http://stackoverflow.com/questions/3311940/r-rjava-package-install-failing $ sudo apt-get install r-cran-rjava ran successfully without error or warning, but my rJava package is not updated, and remains un-updatable... Greatly appreciate any

Hello Everyone, After trying several ways to compile R 3.2.2 without luck, I?m reaching out for help. The ?make check? does not hanges for some reason and when trying to install a package it cannot list the download sites (see below). What could be the problem? ./configure --enable-R-shlib --enable-BLAS-shlib hostname = test uname -m = x86_64 uname -r = 2.6.32-573.7.1.el6.x86_64 uname -s =

Hi, Sorry if this is to wrong mailing list. In that case, please point me to correct mailing list. Please also excuse rather long mail - I am not sure what piece of information would be useful for anybody who could help me. Couple of days back I had put a query about box-plots using GUI. I got some excellent suggestions. One of them was to use JGR/Deducer. It worked quite well for my needs.

I have been futzing around for days tying to get rJava to install on my freshly build Debian Lenny installation. I have R-2.9.1 installed from source in my R_HOME directory and R-2.7.1 installed via apt-get install r-recommended. I was tried many different things, but by accident started up R-2.7.1 as root and viola, successful install. I immediately exited out of R-2.7.1 and started R-2.9.1 as

Having difficulties getting rJava to install on my Debian Squeeze box. Perused the R-help list and tried some things that have worked for others but not for me. Below is the output of my attempted build, R CMD javareconf -e, and sessionInfo(). Note I tried the R CMD javareconf also as root, restarted R after each of these, all no help. * Installing *source* package ?rJava? ... checking for

Hi all, i'm trying to install JGR on linux (see bottom), but it runs into errors. The bottom of the sequence below shows "JavaJD could not be found" Any suggestion, please? $ sudo apt-get install sun-java6-jdk $ sudo update-alternatives --config java There are 5 alternatives which provide `java'. Selection Alternative ----------------------------------------------- 1

Dear R-developers, I am having trouble installing rJava on R 2.8.0 / debian etch. What goes wrong? I am happy for every advice. Best, Christian > install.packages("rJava") Warning in install.packages("rJava") : argument 'lib' is missing: using '/nfs/compdiag/package/R/lib/bioconductor/release_2.3/x86_64' --- Please select a CRAN mirror for use in

Wow, this has amplified my respect and gratitude for the R Debian repositories. Doing all the install.packages() and following the clues about missing dependencies has taken hours! However, I have almost all the packages I want installed on this machine and Rstudio and the shiny server are installed and running fine. Bizarrely, to my mind, I am totally failing on rJava and hence a number of

Below is the output. Thanks for the help. > Sys.getenv() BASH_FUNC_module() () { eval `/cm/local/apps/environment-modules/3.2.10/Modules/$MODULE_VERSION/bin/modulecmd bash $*` } COLUMNS 152 CPATH /cm/shared/apps/uge/8.2.1/include CVS_RSH ssh DISPLAY localhost:10.0 EDITOR

Thanks Dirk and Enrico, First clarification: I'm in this mess because I'm trying to run R 3.5.2 within Debian stable (9/"sretch") using the stretch-cran35 repository. That uses and provides r-api-35 but many of the packages depend upon r-api-3. As Johannes said a day or so back, the way around this is to use install.packages() in R to get the packages you want. That leads you