similar to: zeros to NA's - faster

I have been trying to use R to gather some information from parsed log files (as part of examining some performance issues). I parsed the log files and put the data into an SQLite database, and then used RSQLite to load the data into R. The fields of interest are controller, action and total_time: controller and action have string values; total_time has a decimal value. I first did the

Dear R-developers, I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, Gene,SNP,prot,log10p YWHAE,13:62129097_C_T,1433E,7.35 YWHAE,4:72617557_T_TA,1433E,7.73 Both read.cv() and readr::read_csv() consider prot(ein) name as (possibly confused by

?s 11:46 de 16/04/2024, jing hua zhao escreveu: > Dear R-developers, > > I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, > > Gene,SNP,prot,log10p > YWHAE,13:62129097_C_T,1433E,7.35 > YWHAE,4:72617557_T_TA,1433E,7.73 >

Gene names being misinterpreted by spreadsheet software (read.csv is no different) is a classic issue in bioinformatics. It seems like every practitioner ends up encountering this issue in due time. E.g. https://pubmed.ncbi.nlm.nih.gov/15214961/ https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1044-7 https://www.nature.com/articles/d41586-021-02211-4

Your message seems unclear, and as evidence the respondents are giving various answers. You should provide a small sample of input and output data as it would look in R to avoid this kind of thrashing about. See [1][2][3] for guidance. Note that you also really need to figure out how to make sure your email program sends plain text, because HTML formatting WILL be stripped by the mailing list

Hello All, I have a data frame consisting of 4 columns (id1, id2, y, pred) where pred is the predicted value based on the glm function and my data frame is called "all". "data" is another data frame that has all data but I want to put together some important columns from my original data frame (data) into another data frame (all) as follows and I would like them to be sorted

Hello, I'm trying to run smbtorture against another system. I have installed version 4.0.0alpha9 locally. The remote system is registered with ADS as: distinguishedName: CN=bl-uits-cictest,CN=Computers,DC=ads,DC=iu,DC=edu name: bl-uits-cictest dNSHostName: bl-uits-cictest.ads.iu.edu servicePrincipalName: HOST/bl-uits-cictest.ads.iu.edu servicePrincipalName: HOST/BL-UITS-CICTEST The

I removed my r-base package and installed it through the guide in Cran mirror but I am still getting the same error. Here is the output to the command above: r-base-core: Installed: 3.4.4-1xenial0 Candidate: 3.4.4-1xenial0 Version table: *** 3.4.4-1xenial0 500 500 https://ftp.ussg.iu.edu/CRAN/bin/linux/ubuntu xenial/ Packages 100 /var/lib/dpkg/status 3.4.3-1xenial0 500

Th output to which R : /home/bzamanlooy/anaconda3/bin/R The output to R --version: R version 3.4.3 (2017-11-30) -- "Kite-Eating Tree" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2

I'm having speed problems with the SCSI card we're using to do tape backup. It seems to be functioning in 16 bit mode and the current thinking is that perhaps it's using a legacy driver instead of the correct one. The Adaptec site has a 'driver' for RHEL5 which I've downloaded and tried to install but it seems to have a problem installing on a CentOS-5 system. [root at

Hi, I am pretty new to R and I would apreciatte very much your help to solve my problem. I have 40 csv files that have the same structure, and I want to merge them into a single data frame. I already have load and combined all the cvs files into a large list, and I created two filenames <- list.files('data',full.names=TRUE) All_data <- lapply(filenames,function(i){ ###read cvs

Initially, tt was not a problem with the verifier, we were just inserting a wrong instruction in our pass. Also we were able to figure out the error you pointed out and our pass is running as intended!!! Thanks a lot. On Fri, May 7, 2010 at 12:02 AM, Nick Lewycky <nicholas at mxc.ca> wrote: > Adarsh Yoga wrote: > >> I was able to solve that >> > > What was wrong? I

Hi r-users, I have a matrix B and a list of 3x3 matrices (mylist). I want to calculate the quantiles in the list using each of the value of B as probabilities. The codes I wrote are: B <- matrix (runif(12, 0, 1), 3, 4) mylist <- lapply(mylist, function(x) {matrix (rnorm(9), 3, 3)}) for (i in 1:length(B)) { quant <- lapply (mylist, quantile, probs=B[i]) } But quant

Adarsh Yoga wrote: > I was able to solve that What was wrong? I wasn't able to reproduce it and would still like to teach the verifier whatever it missed. but still crashing with the same error saying > "Unreachable executed". I have attached the output with this mail. This time you've got: %1 = load i32** getelementptr inbounds ({ i32* }* @structobj, i64 0, i32

I''m getting subj trying to run linux-iscsi-4.0.2 on domain0. I tried xen-2.0.6, xen-2-test and xen-3-devel. The same results. I found similar complaints regarding this problem like below: http://www.ussg.iu.edu/hypermail/linux/kernel/0503.1/1622.html http://www.ussg.iu.edu/hypermail/linux/kernel/0503.1/1621.html Not sure if it is xen or linux-iscsi related bug. Any ideas how to cure it

http://bugzilla.mindrot.org/show_bug.cgi?id=1013 sigmunds at iu.hio.no changed: What |Removed |Added ---------------------------------------------------------------------------- Summary|openssh > 3.8p1 make failure|openssh > 3.8p1 make failure | |on Solaris ------- Additional Comments From

I was able to solve that but still crashing with the same error saying "Unreachable executed". I have attached the output with this mail. Thanks in advance. On Thu, May 6, 2010 at 2:38 AM, Nick Lewycky <nicholas at mxc.ca> wrote: > Adarsh Yoga wrote: > >> Yes. Intially the pass was crashing when the module when the module >> verifier was running. I was able to

I've seen a few threads about this, but none that seem to answer my problem I have a list of .txt files in a directory that I am reading into R and row binding together. I am using the following code to do so: # Directory where files are found my.txt.file.directory <- "C:/Jared/Data/Kenya/Wildebeest/Tracking_Data" names.of.txt.files <-

I all, is there a way with R to perform an exact permutation test to replace the wilcoxon test to compare paired series and/or to perform pairwise multiple comparisons for related series after a Friedman test ? Thanks Gilles

Hi, I have created a dll in Fortran and used the Visual Studio 2005 Compiler. I've read that certain problems can arise based on the compiler used and that these problems can sometimes cause R not to be able to access everything appropriately, but I've not found how to fix any of these problems. Specifically, after using dyn.load, I know the dll has been loaded because it is listed in