similar to: Error .jcall(mxe, "S", "fit", c("autorun", "-e", afn, "-o", dirout, : java.lang.NoSuchMethodError: density.Params.readFromArgs([Ljava/lang/String; )Ljava/lang/String;

Dear all, when using .jinit() I get the message .jinit() : Cannot create Java virtual machine (-1). The details: I am using the Dismo package.Dismo has a function 'maxent' that communi-cates with this program(MaxEnt).MaxEnt is available as a stand-alone Java program. It is normal when I execute the command : "jar <- paste(system.file(package="dismo"),

Dear R-helpers, I can not invoke maxent() in Mac OSX. Could you give me any directions on that? Thank you in advance. Here is my info: # (1) the error > me <- maxent(predictors, occtrain, factors='biome') me <- maxent(predictors, occtrain, factors='biome') Error in .jcall(mxe, "S", "fit", c("autorun", "-e", afn, "-o",

Dear R-helpers and Dr. Hijmans, I can not invoke maxent() in GNU Linux. Could you give me any directions on that? There is maxent.jar in version 3.3.3e in the right folder. ######################################## R: > jar <- paste(system.file(package="dismo"), "/java/maxent.jar", sep='') > jar [1] "/ebio/abt6/jmao/rpacks/dismo/java/maxent.jar"

Hi all ? I am a newbie to R and have had a terrible time trying to figure out how to set up an analysis.? I have installed and loaded the appropriate package (phyloclim), but I do not even know where to begin defining one of the arguments. The usage for the command I?m trying to perform is: niche.equivalency.test(spec, n, maxent, mx = 2000) where the argument? maxent???? is a list containing

I was going through this example of maxent use: http://cran.r-project.org/web/packages/maxent/maxent.pdf # LOAD LIBRARY library(maxent) # READ THE DATA, PREPARE THE CORPUS, and CREATE THE MATRIX data <- read.csv(system.file("data/NYTimes.csv.gz",package="maxent")) corpus <- Corpus(VectorSource(data$Title[1:150])) matrix <- DocumentTermMatrix(corpus) # TRAIN/PREDICT

Hi Everyone, I want to get the commands history as a character vector instead of just displaying them, but the function history() just returns NULL. I checked the source code of 'history' and could not find a solution. Anybody has an idea? Thanks! P. S. My original problem is, when a user opens a graphics device like png() or pdf(), I want to know the file name used by this device. I

I use R 2.3.0 under windows. > Sys.getlocale() [1] "LC_COLLATE=Chinese_People's Republic of China.936;LC_CTYPE=Chinese_People's Republic of China.936;LC_MONETARY=Chinese_People's Republic of China.936;LC_NUMERIC=C;LC_TIME=Chinese_People's Republic of China.936" > localeToCharset() [1] "CP936" Now I want to use JGR,which uses UTF-8 encoding. So when I use

Hi all, It is recommended in ?'if' that we use 'else' right after '}' instead of starting a new line, but I noticed deparse() will separate '}' and 'else' when the 'if...else' clause is used inside {...} (e.g. function body). Here is an example: ## if/else inside {} > cat(deparse(parse(text='function(){if (TRUE) {1} else {2}}')),

>example(lm) Error in switch(x[2], "1250" = return("ISO 8859-2"), "1251" = return("KOI8-U"), : argument is missing, with no default > Sys.getlocale(category = "LC_ALL") [1] "LC_COLLATE=Chinese_People's Republic of China.936;LC_CTYPE=Chinese_People's Republic of China.936;LC_MONETARY=Chinese_People's Republic of

Dear R Developer, It seems to be a problem with help file. Not sure if it is related to the new format of Rd parser. Multiple lines are joined together without proper line break. > ?mean There were 14 warnings (use warnings() to see them) ## All lines are joined together and not easy to read. > warnings() Warning messages: 1: In grepl("^[[:blank:]]*$", buffer[length(buffer)]) :

Hello, I want to use a for loop for repeadely calculating a maxent model (package dismo, function maxent()) which creates an object of the class maxent (S4). I want to collect all the resulting object in a list. I tried to simplify my for loop to explain what I want. There are two problems/questions: 1) How can I create the new variables in the loop (using paste) and assign the objects 2) How

Hello. I am trying to use a FORTRAN subroutine from within R (Windows version). This fortran subroutine is compiled using the Open Watcom Fortran compiler and the compiled object file is called ritscale.obj. Following the explanation on pages 193-194 of "The New S language" I use the dyn.load command: > dyn.load("f:/maxent/ritscale.obj") Error in dyn.load(x,

Hi, I've got a dataset with 7 variables for 8 different species. I'd like to test the null hypothesis of no difference among species for these variables. MANOVA seems like the appropriate test, but since I'm unsure of how well the data fit the assumptions of equal variance/covariance and multivariate normality, I want to use a permutation test. I've been through CRAN looking at

Hello list, I seem to have a problem with the openNLP package, I'm actually stuck in the very beginning. Here's what I did: > install.packages("openNLP") > install.packages("openNLPmodels.de", repos = "http://datacube.wu.ac.at/", type = "source") > library(openNLPmodels.de) > library(openNLP) So I installed the main package as

I am currently working on a code which clusters attributes from a data set, then uses a linear regression model to predict NA values in the data set. The code works for almost all cases, but then errors out on a case that seems like it should work the same. This is the line of code that is giving me the problem: NewClusterData[j,att] <- predict(cl,newdata =

Hi, I'm trying to use RWeka and followed the following example from the RWeka manual. ============ ## Use some example data. w <- read.arff(system.file("arff","weather.nominal.arff", package = "RWeka")) ## Identify a decision tree. m <- J48(play~., data = w) m ## Use 10 fold cross-validation. e <- evaluate_Weka_classifier(m, cost = matrix(c(0,2,1,0),

Hi there, With the helps from this list, I can set specific CJK fonts for character string using text() function. for example: song <- CIDFont("SimSun", "GBK-EUC-H", "GBK", "") postscriptFonts(song = song) postscript("test.ps", height = 7, width =7, family = "Times", fonts = c("song"), horizontal = FALSE, onefile =

Dear John Fox, these is still error in Rcmdr package when locale is cp936. > Loading required package: tcltk > Loading Tcl/Tk interface ... done > Error in parse(file, n, text, prompt) : syntax error on line 5090 > Error: unable to load R code in package 'Rcmdr' > Error: package/namespace load failed for 'Rcmdr' > version _ platform

Hi everyone, I want to modify two base R functions 'parse' and 'deparse' immediately after R has started, so I added some code in the file 'Rprofile.site' under the 'etc' directory. Here is a simple example: parse=function(...){ base::parse(...) } I'll get an error when I start R as follows: Error: cannot change value of locked binding for

Dear R users, There is a error message when I run the following code. It is used to load microarray data and use the top 1000 genes for training svm to classify test set . > library(e1071) Loading required package: class > f=read.table("F:\\lab\\ microarray analysis\\VEH LPS\\exprs.txt",