similar to: .jinit() : Cannot create Java virtual machine

Dear all, I get the error when I use maxent.jar: Error .jcall(mxe, "S", "fit", c("autorun", "-e", afn, "-o", dirout, : java.lang.NoSuchMethodError: density.Params.readFromArgs([Ljava/lang/String;)Ljava/lang/String; sessionInfo() result: R version 2.14.0 (2011-10-31)Platform: i386-pc-mingw32/i386 (32-bit)locale:[1]

Dear R-helpers and Dr. Hijmans, I can not invoke maxent() in GNU Linux. Could you give me any directions on that? There is maxent.jar in version 3.3.3e in the right folder. ######################################## R: > jar <- paste(system.file(package="dismo"), "/java/maxent.jar", sep='') > jar [1] "/ebio/abt6/jmao/rpacks/dismo/java/maxent.jar"

Hello, I want to use a for loop for repeadely calculating a maxent model (package dismo, function maxent()) which creates an object of the class maxent (S4). I want to collect all the resulting object in a list. I tried to simplify my for loop to explain what I want. There are two problems/questions: 1) How can I create the new variables in the loop (using paste) and assign the objects 2) How

Hey, I am having troubles using the 'predict' function with in the Raster package. I am using pm<-predict(mm, predictors) where mm is the mahalanobis distance and the predictors are a stack of 6 raster layers containing environmental variables. When I try to run the prediction I get the following warning message: Warning message: In layerNames(x): the layerNames function is

Dear R-helpers, I can not invoke maxent() in Mac OSX. Could you give me any directions on that? Thank you in advance. Here is my info: # (1) the error > me <- maxent(predictors, occtrain, factors='biome') me <- maxent(predictors, occtrain, factors='biome') Error in .jcall(mxe, "S", "fit", c("autorun", "-e", afn, "-o",

Buenas días me gustaria saber cual es la libreria mas actual que contiene al algoritmo de maxima entropia que permite modelar nichos ecologicos; a su vez que libreria presenta mejor temática en la representacion de mapas. Saludos¡ [[alternative HTML version deleted]]

Hi all ? I am a newbie to R and have had a terrible time trying to figure out how to set up an analysis.? I have installed and loaded the appropriate package (phyloclim), but I do not even know where to begin defining one of the arguments. The usage for the command I?m trying to perform is: niche.equivalency.test(spec, n, maxent, mx = 2000) where the argument? maxent???? is a list containing

I was going through this example of maxent use: http://cran.r-project.org/web/packages/maxent/maxent.pdf # LOAD LIBRARY library(maxent) # READ THE DATA, PREPARE THE CORPUS, and CREATE THE MATRIX data <- read.csv(system.file("data/NYTimes.csv.gz",package="maxent")) corpus <- Corpus(VectorSource(data$Title[1:150])) matrix <- DocumentTermMatrix(corpus) # TRAIN/PREDICT

Estimados erreros, Estoy intentando entender como calcula el paquete dismo ( https://cran.r-project.org/web/packages/dismo/index.html) un coeficiente de variación. Os pongo un ejemplo: tmin <- c(10,12,14,16,18,20,22,21,19,17,15,12) # temperatura mínima media mensual de un año tmax <- tmin + 5 # temperatura máxima media mensual de un año prec <- c(0,2,10,30,80,160,80,20,40,60,20,0)

Hola, en la misma definici?n de la funci?n: # P15. Precipitation Seasonality(Coefficient of Variation) # the "1 +" is to avoid strange CVs for areas where mean rainfaill is < 1) p[,15] <- apply(prec+1, 1, cv) Un saludo, Jorge On Martes, 19 de Junio de 2018 13:07:27 Marcelino de la Cruz Rot escribi?: > Hola Jaume: > > Si miras el c?digo de biovars() ver?s que la

Hello. I am trying to use a FORTRAN subroutine from within R (Windows version). This fortran subroutine is compiled using the Open Watcom Fortran compiler and the compiled object file is called ritscale.obj. Following the explanation on pages 193-194 of "The New S language" I use the dyn.load command: > dyn.load("f:/maxent/ritscale.obj") Error in dyn.load(x,

Hi, I've got a dataset with 7 variables for 8 different species. I'd like to test the null hypothesis of no difference among species for these variables. MANOVA seems like the appropriate test, but since I'm unsure of how well the data fit the assumptions of equal variance/covariance and multivariate normality, I want to use a permutation test. I've been through CRAN looking at

random selection of cells in raster based on distance from xy locations Hi, I am trying to sample a raster for random cells that occur within a specific distance of point locations. I have successfully found multiple ways of doing this but have memory issues with very large datasets. To overcome this problem I am working with lists. I am now stuck on how to randomlly sample the correct elements

Hello list, I seem to have a problem with the openNLP package, I'm actually stuck in the very beginning. Here's what I did: > install.packages("openNLP") > install.packages("openNLPmodels.de", repos = "http://datacube.wu.ac.at/", type = "source") > library(openNLPmodels.de) > library(openNLP) So I installed the main package as

Hi Everyone, I want to get the commands history as a character vector instead of just displaying them, but the function history() just returns NULL. I checked the source code of 'history' and could not find a solution. Anybody has an idea? Thanks! P. S. My original problem is, when a user opens a graphics device like png() or pdf(), I want to know the file name used by this device. I

Dear R Developer, It seems to be a problem with help file. Not sure if it is related to the new format of Rd parser. Multiple lines are joined together without proper line break. > ?mean There were 14 warnings (use warnings() to see them) ## All lines are joined together and not easy to read. > warnings() Warning messages: 1: In grepl("^[[:blank:]]*$", buffer[length(buffer)]) :

Dear all, I am currently running an ENFA in R using Adehabitat pkg to assess species distribution and I am really stuck and need some help to finalize my project. I run the ENFA in both original location data and pseudo-absence points (the latter randomly generated using dismo pkg), and now I would like to assess the performance of the ENFA, however, I am not sure about how to tackle this. I

Hi, I am looking for a way to save the result of a function, e.g the lm()-function to a file and reload it afterwards again. I'd like to do that in order to minimize the used memory when running the function in a loop. The actual function I want to store is the evaluate() from the dismo package. I tried it with save() and load() but I am not sure if that is the way I should do it as I

Hi R user, Could you please give me some hints on how I can convert text in table format in R? I was doing model assessment using dismo package for example: bg <- randomPoints(current, 500) pvtest <- data.frame(extract(current, occtest)) avtest <- data.frame(extract(current, bg)) e2 = evaluate(model, p=pvtest, a=avtest) > e2 class : ModelEvaluation n presences : 10 n

Hello there. When I try to start the jvm using .jinit() after loading library(rJava) I don't seem to be able to as I get the message: Error in .jinit() : Cannot create Java Virtual Machine What is going on here? I have java 1.6 installed on my XP machine Thanks again. -- View this message in context: http://www.nabble.com/.jinit%28%29-problem-tf3774265.html#a10671963 Sent from the R