similar to: plot separate groups with plotmeans()

Hi, I want to add error bars to a plot generated with xyplot. I've tried both errbar() and plotCI(), but in both cases the points are not in the same place. It's as if the two functions are using a different frame of reference for the plotting area. for example: means <- c(92.5, 92.25, 90.9, 91.0, 94.15, 90.05) #means time <- c(1,1,2,2,3,3) #occasion variable group <-

Hi, This is really strange. Can anyone help explain what's going on here (on 3 and 7)? > targets <- seq(from=.1, to=.9, by=.1) > targets[1]==.1 [1] TRUE > targets[2]==.2 [1] TRUE > targets[3]==.3 [1] FALSE > targets[4]==.4 [1] TRUE > targets[5]==.5 [1] TRUE > targets[6]==.6 [1] TRUE > targets[7]==.7 [1] FALSE > targets[8]==.8 [1] TRUE >

Hi, I'm trying to randomize a sequence of trials for an experimental design. The trials consist of values for each of two factors. As is there are 30 combinations of the two factors, and I want them to be ordered randomly but with the requirement that for one of the factors, the value can never be the same as the previous value. I'm currently randomizing my dataframe by using:

Hi, There is an object, ".Last.value" to which the result of the most recent evaluation is assigned. This is similar to "ans" in Matlab. In Matlab "ans" can be very useful and time-saving, but typing the larger R version is somewhat clunky and takes away from the usefulness. Is it possible to reassign '.Last.value' to something simpler, like

Hi, I've looked all over for a solution to this, but haven't had much look in specifying what I want to do with appropriate search terms. Thus I'm turning to R-help. In the process of trying to write a simple function to rename individual column names in a data frame, I ran into the following problem: When I rename the columns within my function, I can't seem to get it to

Hi, I want to plot means with standard deviations of Total Nitrogen (TN) across 4 stations (S1-S4) and over 3 years (2007-2009). I want this plot in one panel. I do not want medians (bwplot, boxplot). I have tried a few different packages and it seems that ggplots with plotmeans was the fastest (I am not extremely skilled in writing my own scripts). Unfortunately, there is no grouping

I know that simple line plots showing a point representing the mean + an error bar are difficult in R, but I am clearly missing something. I simply want to show how a the mean and 95% CI of a chemical concentration (y) vary over space (x) under four temperature regimes (T; a categorical factor). plotmeans, in the gplots library, should allow for such a figure, right? After all, it invokes lm()

Hello, I am using library(gplots) to do something like data(state) x1 <- state.area/10000 x2 <- x1+round((rnorm(length(state.area),3,3))) plotmeans(x1 ~ state.region) Is it possible to plot x2 to x1 in the same graph, something like: linesmeans(x2 ~ state.region) Best wishes, Cheba [[alternative HTML version deleted]]

Hello, I make frequent use of the *step()* and, for plotting, *all.effects() *functions for *lm()* objects. I am now doing more with *lme()* random effects models, and haven't been able to find functions similar to *step()* or *all.effects()* which will accept *lme()* objects. Do similar functions for either exist? If someone could point me in the right direction it would be much

I can not seem to get a ylim argument into plotMeans() is there anyway to do this. thanks in advance Stephen -- Let's not spend our time and resources thinking about things that are so little or so large that all they really do for us is puff us up and make us feel like gods. We are mammals, and have not exhausted the annoying little problems of being mammals. -K. Mullis [[alternative

Hi, I'm having some problems with the aggregate() function in the {stats} package, and the documentation doesn't address them. 1) Why would the first line work, but the second not? According to the help file, it accepts a "data=" argument. > with(tsrc, aggregate(x=DistRatio, by=list(Condition), FUN=mean)) Group.1 x 1 Congruent 1.741789 2 Mismatch 1.771425

Hello everyone, I have tried to look for this everywhere and so far have no luck. I have a plotMeans(DV, IV1, IV2, error.bars="se") graph that plots my data (DV-continuous, IVs are factors, IV1 - two levels, IV2-four levels). I am trying to increase a scale of my y-axis (to be consistent with my other graphs), but unfortunately nothing works with "plotMeans" function, which

Hello, I am confused about the order of nesting in mixed models using functions like aov(), lme(), lmer(). I have the following data: n subjects in either condition A or B each subject tested at each of 3 numerical values ("distance" = 40,50,60), repeated 4 times for each of the 3 numerical values ("trial" = 1,2,3,4) Variable summary: Condition: 2 level factor Distance:

Dear list, I am new with ggplot2 and I have spend quiet some time putting together the following code to create the attached plot. However there's still a few things that I'm having trouble with! I would be grateful if someone can tell me how to fix (1) the colour of my bars into grey scales (2) removing the y-axis (species name) on the right figure to avoid duplication, and (3) fix the

Hi, i'm using this lines of code: dodge <-position_dodge(width=0.9) ggplot(dfm,aes(x = X,y = value)) + geom_bar(aes(fill = variable), position=dodge, stat="identity") + geom_errorbar(aes(ymin=value-er, ymax=value+er),width=0.25, position=dodge,stat="identity") to plot this data frame X variable value er 1 A X4 58.74 9.44 2 B X4

I was wondering if anyone could help me with this, simple problem. I am essentially following the example on Hadley's webpage (http://had.co.nz/ggplot2/geom_errorbar.html), but it still doesn't make any sense to me. df <- data.frame(trt = factor(c("intact", "intact", "removed", "removed")), coon = c(0.093, 0.06, 0.057, 0.09), group =

Hi everyone (again), before you all start screaming that the reordering of factors has been discusse on several threads and is not particular to ggplot2, hear me out. I can easily reorder my x-axis factor in facet.grid() in ggplot2. What I cannot reorder are the factors represented on the strips. I can see that the graphs are changing, so I am afraid of what it is I am doing. Why is ggplot2

Hello, I'm attempting to plot error bars side by side rather than stacked on top of each other with ggplot2. Here is the sample code I am using: #Code #Data spd<-c("s","f","f","s","f","s","s","s","f","f","s","f") r<-c(4.9,3.2,2.1,.2,3.8,6.4,7.5,1.7,3.4,4.1,2.2,5)

Hi, anybody know why this not works for several plots ? When i set onefile=T the plots are stacked one about another , onefile=F only the first plot is shown in AllbusMeansPlots.svg. [h2 is a data.frame] ......hist and sapply works for several plots nice with RSvgDevice ! Maybe setting the title after apply is a problem, but until yet i didn't found a better solution ? library(RSvgDevice)

Dear R fans, I am preparing a lecture discussing the paper of Wilkinson and APA Task Force on Statistical Inference (1999, American Psychologist, 54, 594-604.) I'd like to demo their Figure 3B (p. 602) with R. That is to add plotMeans(...) with dots of BHH2::dotPlot(...) . Is there any elegant script to do the job? Thanks --------------- LI, Xiaoxu