similar to: getting p-value and standard error in PLS

In the lm function the summary(lmobject) we have adjusted.r square and f statistics Do we have similar to the pls package and how to get it -- View this message in context: http://r.789695.n4.nabble.com/R-square-and-F-stats-in-PLS-tp3924484p3924484.html Sent from the R help mailing list archive at Nabble.com.

How to use the segments in the PLS fit1 <- mvr(formula=Y~X1+X2+X3+X4+x5+....+x27, data=Dataset, comp=5,segment =7 ) here when i use segments,the error was like this rror in mvrCv(X, Y, ncomp, method = method, scale = sdscale, ...) : argument 7 matches multiple formal arguments Please help -- View this message in context:

Hi how do we get intercepts standard error. I'm using the package pls. i got the coefficient but not able to get the stabdard error -- View this message in context: http://r.789695.n4.nabble.com/How-to-get-intecerpt-standard-error-in-PLS-tp3932104p3932104.html Sent from the R help mailing list archive at Nabble.com.

hi R help group, I have installed PLS package in R and use it for princomp & prcomp commands for calculating PCA using its example file(USArrests example). But How I can use PLS for Partial least square, R square, mvrCv one more think how i can import external file in R. When I use plsr, R2, RMSEP it show error could not find function plsr, RMSEP etc. How I can calculate PLS, R2, RMSEP, PCR,

Hi I'm performing a PLS This is my data present in a file Year Y X2 X3 X4 X5 X6 1960 27.8 397.5 42.2 50.7 78.3 65.8 1960 29.9 413.3 38.1 52 79.2 66.9 1961 29.8 439.2 40.3 54 79.2 67.8 1961 30.8 459.7 39.5 55.3 79.2 69.6 1962 31.2 492.9 37.3 54.7 77.4 68.7 My R-code Data <- read.csv("C:/TestData.csv") variable=names(Data)[4:8] dataset=NULL dataset$X=NULL len=length(variable)

dear all, I am a new comer to R and statistic. Now I have a little confuse about the package pls. I have to use 5 components to form a model. There are strong relationship between some of the components, which leads to the changes of the sign of each coeficeince, of course this is unwanted when using the normal regression way. So I choose the way of PLS, which is good at solve this kind of

Hello! I need help to use the package pls.pcr in R. I installed R in an IRIX 6.5, using the version of R 0.64.1 from sgifreeware(I didn't get to install the newest version using make). I need to use the package pls.pcr and when I give the command: # R R : Copyright 1999, The R Development Core Team Version 0.64.1 (May 8, 1999) R is free software and comes with ABSOLUTELY NO

Dear R-help users, I'd like to use the R-package "pls" and want to extract the explained Y-variance to identify the important (PLS-) principal components in my model, related to the y-data. For explained X-variance there is a function: "explvar()". If I understand it right, the summary() function gives an overview, where the y-variance is shown, but I can't

Dear R-helpers, I have performed a PLS regression with the mvr function from the pls.pcr package an I have 2 questions : 1- do you know if mvr automatically centers the data ? It seems to me that it does so... 2- why in the situation below does the output say that the optimal number of latent variables is 4 ? In my humble opinion, it is 2 because the RMS increases and the R2 decreases when 3 LVs

Dear list I am using the mvr function of the package pls.pcr to compute PLS resgression using a X matrix of gene expression variables and a Y matrix of medical varaibles. I would like to obtain the R2 (sum of squares captured by the model) and Q2 (proportion of total sum of squares captured in leave-one-out cross validation) of the model. I am not sure if there are specific slots in the

Hi, Newbie question about the pls package. Setup: Mac OS 10.3.9 R: Aqua GUI 1.01, v 2.0.1 I want to get R^2 and Q^2 (LOO and Leave-10-Out) values for each component for my model. I was running into a few problems so I played with the example a little and the results do not match up with the comments in the help pages. $ library(pls) $ data(NIR) $ testing.plsNOCV <- plsr(y ~ X, 6, data =

Hi My data looks like this startDate="2008-06-01" dateRange =c( "2008-10-01","2008-12-01") Is there any method to find the week number from the startDate range ----- Thanks in Advance Arun -- View this message in context: http://r.789695.n4.nabble.com/Week-number-from-a-date-tp4410223p4410223.html Sent from the R help mailing list archive at Nabble.com.

All, I have been using a data set to build pls models for three different soil properties. Two of the three models run fine; however I receive the following error for the final model. > libs.IC.cal <- mvr(libs.IC.fmla, data = libsdata.cond.cal, ncomp=20,validation = "LOO", method = "oscorespls") Error in colMeans(x, n, prod(dn), na.rm) : 'x' must

Dear developeRs, I maintain a package 'pls', which has a main fit function mvr(), and functions plsr() and pcr() which are meant to take the same arguments as mvr() and do exactly the same, but have different default values for the 'method' argument. The three functions are all exported from the name space. In the 'pre namespace' era, I took inspiration from lm() and

Hi I have a data-frame which look like this X1 X2 X3 1 3 5 2 4 6 3 6 1 I want to apply a formula Y=6*X1 + 7*X2 + 8*X3 for every row Thanks in Advance -- View this message in context: http://r.789695.n4.nabble.com/how-to-call-a-function-for-each-row-tp4122906p4122906.html Sent from the R help mailing list archive at Nabble.com.

Hi I have set of records seperated by a separator say "$$$" i want to get the values in a dataframe. eq qwer$$12$$qwre ewrtr$7789$ewwe I want the output as\ V1 V2 V3 qwer 12 qwre ewrtr 7789 ewwwe Please help me ----- Thanks in Advance Arun -- View this message in context: http://r.789695.n4.nabble.com/Help-in-splitting-the-records-tp4650827.html Sent from

Hello, I need help with a partial least square regression in R. I have read both the vignette and the post on R bloggers but it is hard to figure out how to do it. Here is the script I wrote: library(pls) plsrcue<- plsr(cue~fb+cn+n+ph+fung+bact+resp, data = cue, ncomp=7, na.action = NULL, method = "kernelpls", scale=FALSE, validation = "LOO", model = TRUE, x = FALSE, y =

Hi I have a variable str = " X", "Y" and values ("0","12") i want to set value for X =0 and Y =12 and use inside the program. how to do this Please anybody help me. -- View this message in context: http://r.789695.n4.nabble.com/Setting-the-Values-tp3823388p3823388.html Sent from the R help mailing list archive at Nabble.com.

Hi I have a data class wise. I want to create a histogram class wise without using for loop as it takes a long time my data looks like this x class 27 1 93 3 65 5 1 2 69 5 2 1 92 4 49 5 55 4 46 1 51 3 100 4 ----- Thanks in Advance Arun -- View this message in context: http://r.789695.n4.nabble.com/Histogram-classwise-tp4528624p4528624.html Sent from the R help mailing list archive

Hi I 've a data a=c(10,20,30) b=c(100,200,300) c=c(50,60,70) I want to compare a[1]<=c[1]<b[1],...... How to compare for all the records ----- Thanks in Advance Arun -- View this message in context: http://r.789695.n4.nabble.com/comparing-three-vectors-tp4636728.html Sent from the R help mailing list archive at Nabble.com.