similar to: create a factor variable from two numeric variables when order is irrelevant

The documentation says, "pmax and pmin take several vectors as arguments and return a single vector giving the parallel maxima (or minima) of the vectors." I discovered that, if you use a matrix or array instead of a vector, pmax returns a matrix or array, respectively. This makes pmax and pmin much more useful, and should not be left to people to discover on their own! For example:

Hi, Please consider the following : x = c(1,3,NA,5) y = c(2,NA,4,1) min(x,y,na.rm=TRUE) # ok [1] 1 max(x,y,na.rm=TRUE) # ok [1] 5 sum(x,y,na.rm=TRUE) # ok [1] 16 pmin(x,y,na.rm=TRUE) # ok [1] 1 3 4 1 pmax(x,y,na.rm=TRUE) # ok [1] 2 3 4 5 psum(x,y,na.rm=TRUE) [1] 3 3 4 6 # expected result Error: could not find function "psum" # actual result

Hello, I'm trying to override pmin and pmax for my own matrix. These two functions have ... as an argument. I tried to override them as follows: setMethod("pmax", class_name, function(x, ..., na.rm) { ... }) I use this way to override primitive functions such as min/max and it works fine. But it doesn't work for pmin and pmax. I guess because they are regular functions? How

Dear R user, I have written a function which returns max,min and variation of a power (see below) Power is a given matrix(1,n) I call the function >Variation<-VAR(p,(n-deltat)) Now the problem is when I want plot(Results[1],Results[2]). Not possible! I become the following error (in english it means: Error in as.double.default(x) :Object cannot be transformed in double) >

Hi everyone, I am wondering what¹s stopping the LLVM optimizer (opt -O3) from eliminating the apparently useless « icmp sgt » instruction in the following piece of LLVM IR. > ; ModuleID = 'lambda-opt.bc' > target datalayout = "e-m:o-i64:64-f80:128-n8:16:32:64-S128" > target triple = "x86_64-apple-macosx10.10.0" > > ; Function

Here's a version that doesn't try to do block deletion on it's own. If you use -adce then -simplifycfg, you get what you want. It passes all tests except one, which is that we delete an invoke of a pure function, IE Transforms/ADCE/dce_pure_invoke.ll - I'm not sure why that's bad. The reason we delete it is because it returns false to I.mayHaveSideEffects(), and in particular,

Dear all, I'm using the package "Genetics", and I'm interested in the computation of D' statistics for Linkage Disequilibrium, for which the LD() command has been realised. Unfortunately I don't find any reference on "how" the D' is computed by the LD() function. In the package documentation it is generally referred as "MLE" estimation, but

Hi, in order to save space for a publication, it would be nice to have a combined scatter and density plot similar to what is shows on http://addictedtor.free.fr/graphiques/RGraphGallery.php?graph=78 I wonder if anybody perhaps has already developed code for this and is willing to share. This is the reproducible code for the histogram version obtained from the site: def.par <-

Why does the assignment of a 3178x93 object to another 3178x93 object remove the dimension attribute? > GT <- array(dim = c(6,nrow(InData),ncol(InSNPs))) > dim(GT) [1] 6 3178 93 > SNP1 <- InSNPs[InData[,"C1"],] > dim(SNP1) [1] 3178 93 > SNP2 <- InSNPs[InData[,"C2"],] > dim(SNP2) [1] 3178 93 > dim(pmin(SNP1,SNP2)) [1] 3178 93

Hi, Algorithm question: I have two sets of "intervals", where an interval is an ordered pair [a,b] of two numbers. Is there an efficient way in R to generate the intersection of two lists of same? For concreteness: I'm representing a set of intervals with a data.frame: > list1 = as.data.frame(list(open=c(1,5), close=c(2,10))) > list1 open close 1 1 2 2 5

Hi, I wonder whether similarly to the very quick rowSums and colSums functions in the base package, one could add quick functions that calculate the min or max over rows / cols in a matrix. While apply(x,1,min) works, I found out by profiling a program of mine that it is rather slow for matrices with a very large number of rows. A quick functionality seems to be already there in the

Hi, I would like to write a little automatic routine in R, but i am a too much of a beginner for that. I will appreciate any help regarding this particular problem. Let?s suppose I have a data.frame with j columns (from 1 to n) and i rows (from 1 to p). I would like to write a procedure which reads every column j (j from 1 to n) and compare each value with the interval [0,1]. If z(i,j) is

Hi, I have two questions want to ask. 1. If I have a matrix like this, and I want to figure out the rows whose value in the 3rd column are less than 0.05. How can I do it with R. hsa-let-7a--MBTD1 0.528239197 2.41E-05 hsa-let-7a--APOBEC1 0.507869409 5.51E-05 hsa-let-7a--PAPOLA 0.470451884 0.000221774 hsa-let-7a--NF2 0.469280186 0.000231065 hsa-let-7a--SLC17A5

Dear R users, I'm trying to write a function which returns minimum,maximum,mean of a vector(power) I've done the following : VAR<-function(power,length){ for(i in tml:length)){ tvar[i]<-i pmean[i]<-mean(power[i:i+deltat]) pmin[i]<-min(power[i:i+deltat]) pmax[i]<-max(power[i:i+deltat]) varmax[i]<-100*(pmax[i]-pmean[i])/pmean[i]

Dear All, Sorry for the typoes earlier, let me repost the question. Suppose I want to generate sequences of length 3 from two symbols {1,2}, we get the following 8 sequences 1 1 1 1 1 2 1 2 1 1 2 2 2 1 1 2 1 2 2 2 1 2 2 2 However, I do not want all these 8 sequences. I call two sequencs to be isomorphic if one sequence could be obtained from the other by relabelling the symbols. For example,

Hello, all, I have a dataframe of three rows and umpteen columns. I want to show the maximum, minimum, and median with a vertical line and a central dot (I'd use a boxplot, but with only three data points, that's overkill; I can't just use points, because of overlap and some of the other data plotted on the graph). This works: > boxplot(data_frame,

Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got warnings() when installing and error message when trying to load the package, can anyone suggest what went wrong? many thanks John > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite("KEGGSOAP") BioC_mirror:

Hi - I'd like to construct and plot the percents by year in a small data set (d) that has values between 1988 and 2007. I'd like to have a breakpoint (buy no discontinuity) at 1996. Is there a better way to do this than in the code below? > d year percent se 1 1988 30.6 0.32 2 1989 31.5 0.31 3 1990 30.9 0.30 4 1991 30.6 0.28 5 1992 29.3 0.25 6 1994 30.3

I have two variables in a data frame, I want to generate two additional variables. For every observations (i.e. every row), I want the first new variable 'min' to carry the minimum of the two existing variables, and I want the second new variable 'max' to carry the maximum of the two existing variables. I then want to sort the data frame by min and max, and delete duplicated rows

Please help, I tried a program on S-plus, and it worked. Also I tried the same program on R but not worked. Here is the programme. I put it in a function form. The model and assumption are at the bottom. where counts<-c(22,2,2,0,5,7,14,0,0,2,36,0,0,1,17,10) which is name.data, i is row size and j is the column size. symmetry function(i, j, name.data) { row <- (c(1:i)) col <-