similar to: plotting on an image

Hi R, Wanted to check if there are any packages available for getting the (x,y) data points of a graph or a plot, which is in the image format. Say, the plot could be a published report, and I want to get the points of the curve plotted. (I am speaking something related the subject discussed in http://www.uniphiz.com/digitizing.htm) Thanks, Shubha This e-mail may contain

Dear all, I am looking for a function that can plot bitmap images and by plotting I mean a function that can read an image's matrix structure with integers and assign colors. Do you please suggest me what else I can do for plotting these images? I would like to thank you for your reply B.R Alex [[alternative HTML version deleted]]

Hi, I am using the EBImage package for image display and analysis and want to read the cursor (mouse) position on the image. The function "locator()" would be ideal, but this appears to work only on plots, not images. > a <- Image((0:(w^2))/w^2, c(w,w)) > if ( interactive() ) display(a) > locator(n = 10, type = "p") Error in locator(n = 10, type = "p")

Has anyone yet tried incorporating rasterImage into the base image() function? It seems to make a *huge* difference, with a very small number of added/changed lines of code. (Of course I have barely tested it at all.) Is there any reason this *shouldn't* go into the next release? > source("image.R") > z <- matrix(runif(1e6),nrow=1000) > image(z) >

I want to create a plot of positions (x(t),y(t)) of animals in a barn for t=1,2,... (I have in mind creating many of these, saving them as png's and combining them into a small movie). I have an image file showing the physical layout of the barn, and I would like to have that image as background for the plots. Can that be done in R (easily) or is that something I should do outside of R using

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis !

Hello Everybody, I have an eps figure an awesome bacteria and a plot (generated using R) also in eps format. Now it looks like there is space for only one figure and I have to insert the picture of the bacteria into the plot. Is there a way to insert figures (eps/png/jpg) in to plots (may be control over placement of figures in the plot as well?) ? By plots I mean data represented using axes and

Hi, on a lattice, I have binary 0/1 data. 1s are rare and may form clusters. I would like to know the size/length of largest cluster. Any help warmly welcome, Sylvain.

Hello, I have been exploring the possibility to transition some code that currently uses image() to use the new rasterImage(). To date, I haven't been able to specify a color look-up strategy that works. For example... nx <- 100 ny <- 100 m <- matrix(data = rep(seq(0,1, length = nx), ny), ncol = nx, nrow = ny, byrow = TRUE) plot(1:nx, 1:ny, type = "n") my.color

Dear all, This may be specific to Mac, I haven't had a chance to test another platform. Consider this, plot(1,1,t="n") rasterImage(matrix(1),1,1,1,1) library(grid) grid.rect(gp=gpar(fill="grey")) The grid.rect covers the full device window as expected. However, when I resize the window ever so slightly (interactive device) the rectGrob is suddenly clipped to the previous

Hello, I've been having some trouble working with the aroma package and have realized that it's my ebimage is at the root of the problem. The package builds but during testing it fails because of an undefined symbol as seen below: installing to /usr/local/lib64/R/library/EBImage/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices **

Hello, Working with Windows 7 in a HP laptop with R-2.10.1 I download and installed ImageMagick-6.3.7.7-Q16-Windows-dll.exe and GTK 2.12.9-win32-2, then downloaded and installed from local file EBImage_3.2.0.zip and I got: > library(EBImage) Loading required package: abind Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hi R-help list What is the threshold for the `useRaster` argument of graphics::image() to decide whether a grid is "regular" or not (i.e. the usage of useRaster=T is allowed or not). My `dev.capabilities("rasterImage")$rasterImage` is "yes". I could not find this information in the internet. I also could not find the source code of the graphics::image() function (I

Hi, I have an S4 class directly derived from 'array' as shown in the code below (EBImage package of Bioconductor 2.1, devel), it simply contains array adding a couple of slots: setClass ("Image", representation (colormode="integer", filename="character", compression="character", resolution="numeric", features="list" ),

Hello all I've just spent a few joyless hours trying to get EBImage to install in R. I'm running Ubuntu (Hardy Heron), fully updated (including R and Imagemagick). EBImage installation seems to work, but when I 'library(EBImage)' I get the following: - - - - Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/qilin/R/i486-pc-linux-

Do I recall correctly that there is an R package that can take an image, and help one estimate the x/y coordinates? I can't find the package, thought it was an R-tool, but would appreciate any leads. Thanks, Rob

Hi, on Windows XP Pro with R version 2.7.1 Patched (2008-06-27 r46012) the 'Cairo' and the 'EBImage' packages does not play well together. Loading EBImage before Cairo cause the following to happen: # Rterm --vanilla > library(EBImage); > library(Cairo) Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hi group, I've spent half a day trying to figure this out and searched through different forums. I've tried to load EBImage but am getting the following problem: >Error in inDL(x, as.logical(local), as.logical(now), ...) : > cannot initialize ImageMagick >Error: package/namespace load failed for 'EBImage' My path is like this: C:\\Program

Dear Sir/Madam, I am using R-Image in an MSc statistics dissertation and have found, in various EBImage manuals a functions - bwimage, which I would like to use, however I can't find it within my version of R. Could you tell me if the function has changed or what I need to do to be able to use it. Many thanks Alice [[alternative HTML version deleted]]

I am trying to add a copyright disclaimer outside the plot borders of some images I have created. I can use mtext() to add the written portion, but I would like to have the Creative Commons license image (http://en.wikipedia.org/wiki/File:Cc.logo.circle.svg) before the text. I've found that I can plot a .png image inside the plot boundaries using rasterImage() but I can't figure out how to