similar to: Checking and building package

I have installed lme4 library, but when I try something with lmer() function, I receive error message. On the other hand, I can use lme() function from the same library. Are those two the very same function or not? I am a bit confused. I am using: $platform: "i386-pc-linux-gnu" $arch: "i386" $os: "linux-gnu" $system: "i386, linux-gnu" $major: "2"

Hello! I am running analysis on the data from 4 experiments, with approximately 4600 rows (cases). My working model is: fitA1 = lme(RT~F1+F2+L,random=~1|Experiment/Subject,data=data) Model works very fine, but if I try to check whether the effect of L depends on Experiments/Subjects with: fitA2 = lme(RT~F1+F2+L,random=~1+L|Experiment/Subject,data=data) [with the idea to make: anova(fitA1,fitA2)]

Hello, Recently, I have asked for a help with building graphs, and I got few great advices. Now, my appetite is growing :) and I wander how to add legend for two (or more) lines in following example: matplot(DAT[, c(3,4)], type="b", ylim=c(0,8), xaxt="n", yaxt="n", + pch=c(21,22), col="black", lty=c("dashed","solid"), xlab="",

Dear Helpers, I am new in Linux and R, trying to update packages I need in my work, but repeatedly I failed for reasons I do not understand. First, I use: > update.packages() Then, I choose nearest mirror and accept update of 'Design' package: > Design : > Version 2.0-9 installed in /usr/lib/R/site-library > Version 2.0-12 available at http://cran.r-mirror.de > Update

Hello! I am trying to install gtkDevice package, but without success. It is complaining about: * Installing *source* package 'gtkDevice' ... checking for gtk-config... no checking for gtk12-config... no ERROR: Cannot find gtk-config. I am using Ubuntu 6.06, and I cannot find that package in the repositories. Is there a remedy of any kind? What can I do? Best, Petar M.

Hello ALL! I am an Linux user (Debian testing i386), with very dusty Win-experience. Nevertheless, my colleagues and I are making some package in R, and I built C-routines to speed up things. I followed instruction how to compile C for R (very useful link: http://www.stat.lsa.umich.edu/~yizwang/software/maxLinear/noteonR.html, and links listed there). Everything works like a charm in Linux. I

I am using R 2.1.1 on i486-pc-gnu-linux (Ubuntu Breezy). Recently, I bought new laptop HP nx8220 and installed Breezy with a few problems starting X-Windows. Nevertheless, I followed some instruction, managed to start X, and added R from the Ubuntu's repositories. When I try to produce any graph (like plot, bwplot etc.), I receive an error message: can't find X11 font Error in X11( ....

Hello ALL! I am running Fedora 16 x86_64. Due to some dubious problems, that i couldn't resolve, with the TeXLive (2007, which is a default), I removed it. That removed R as well, and some other dependent packages. Then, I installed TeXLive 2011 from CTAN. However, when I wanted to install R, from Fedora's repositories, it asks for some TeX dependencies (for example, tex-preview,

Hello! Interesting thing is that I cannot install rgl. It reports: checking for X... no configure: error: X11 not found but required, configure aborted. ERROR: configuration failed for package ?rgl? * Removing ?/usr/local/lib/R/site-library/rgl? I am pretty sure that my X11 is fine. Does anyone know why I got this error message? Best, PM

Hello ALL! Can anyone tell me how to specify qqmath() function with distribution qgamma? In help it is bit vague how to pass shape and scale parameters for gamma. Thank you in advance. Best, PM

Hello ALL! I have a problem to plot factor (lets say gender) as a line, or at least both line and point, from ols model: ols1 <- ols(Y ~ gender, data=dat, x=T, y=T) plot(ols1, gender=NA, xlab="gender", ylab="Y", ylim=c(5,30), conf.int=FALSE) If I convert gender into discrete numeric predictor, and use forceLines=TRUE, plot is not nice and true, since it shows values

Hello! Can anyone help me to build a graph with the alphanumeric values on x-axis, with two lines (preferably doted and solid, or similar) that present values on y-axes. In a toy example, data frame could be like this: x.orig x.num y1 y2 a 1 0.2 0.4 b 2 0.1 0.1 c 3 0.3 0.3 d 4 0.3 0.15 e 5 0.1 0.05 I can make graph only if I use values converted to numeric in "x.num", but not original

Hello, I ran two lme analyses and got expected results. However, I saw something suspicious regarding p-level for fixed effect. Models are the same, only experimental designs differ and, of course, subjects. I am aware that I could done nesting Subjects within Experiments, but it is expected to have much slower RT (reaction time) in the second experiment, since the task is more complex, so it

Hello ALL! First, I apologize for sending question that spill-out from the scope of this list. However, you might be essentially the best informants. In brief, I am thinking to give second shot to the Debian. Currently I am using Ubuntu 9.04, but Debian still teases me, so to say. I used to use Debian testing (Lenny at that time), but when Lenny became stable, things became very shaky in

Hello ALL! Some times ago I started to learn and play with Bayesian stuffs. Many advice use of WinBUGS for Bayesian inference Using Gibbs Sampler. However, WinBUGS is discontinued, and now, development is under OpenBUGS. I wasn't lazy, so I installed both and tried out. In more than 90% of cases they give comparable outcome. But in few cases I got substantial differences. Recently, I read nice

On Mon, Jan 12, 2015 at 01:19:18PM +0100, Stephan Bosch wrote: > > Petar Bogdanovic schreef op 12-1-2015 om 13:05: > >Hi, > > > >I ran into some troubles while upgrading pigeonhole: > > > > crane dovecot: lda(petar): Error: sieve: Failed to access user storage (temporary failure) > > crane dovecot: lda(petar): Error: sieve: file storage: Could not

Hello! I recently switched to Debian testing OS and explanation at the: http://cran.at.r-project.org/bin/linux/debian/ is a little bit fuzzy. Can anyone give step-by-step how-to have updated R on Debian testing and/or unstable. Thanks in advance! PM

On Fri, 2009-03-20 at 12:00 +0100, r-sig-debian-request at r-project.org wrote: > On 19 March 2009 at 10:08, tyler wrote: > | > I recently switched to Debian testing OS and explanation at the: > | > http://cran.at.r-project.org/bin/linux/debian/ > | > is a little bit fuzzy. Can anyone give step-by-step how-to have > updated > | > R on Debian testing and/or unstable.

Hello ALL! I am running Fedora 16 x86_64. Due to some dubious problems with the TeXLive (2007, which is a default), I removed it. That removed R as well, and some other dependent packages. Then, I installed TeXLive 2011 from CTAN. However, when I wanted to install R, from Fedora's repositories, it asks for some TeX dependencies (for example, tex-preview, texinfo-tex, texlive, texlive-dvips

Hello! My question is stated in the Subject: Is it possible to model with Laplace's error distribution? For example, lmer() function have few families of functions, like binomial etc., but not Laplace. Is there any other package that would allow for Laplace? Or is there a way to give "user-defined" family? Sincerely, P. Milin