similar to: Row names and matrixs

#Hello, #I have a question about obtaining results from a loop I have written. #Below is a sample of individual genotypes from a genetic question I am working on called "P.genotype.sample ". P.genotype.sample<-matrix(10,10,10) P.genotype.sample[,1]<-c(2,2,1,5,1,1,5,6,1,3) P.genotype.sample[,2]<-c(6,3,3,6,8,1,6,7,2,3) P.genotype.sample[,3]<-c(2,2,2,3,3,2,2,2,3,3)

Hello R-help community, I have another question about filtering datasets. Please consider the following "toy" data matrix example, called "x" for simplicity. There are 20 different individuals ("ID"), with information about the alleles (A,T, G, C) at six different loci ("Locus1" - "Locus6") for each of these 20 individuals. At any single locus

> On Apr 20, 2020, at 1:47 PM, James Y Knight via llvm-dev <llvm-dev at lists.llvm.org> wrote: > > But the most recent NaCL toolchain release is based on LLVM 3.7 from 2015. > > Unless you're planning to upgrade the NaCL toolchain to use a new release based on LLVM devhead (which would seem a rather expensive thing to attempt now, given the plan to desupport it in a

Hello All, Once again thanks for all of the help to date. I am climbing my R learning curve. I've got a few more questions that I hope I can get some guidance on though. I am not sure whether the etiquette is to break up multiple questions or not but I'll keep them together here for now as it may help put the questions in context despite the fact that the post may get a little long.

Hi Fangrui, As you noted we are working on helping our NaCl users transition to WebAssembly and new web APIs that cover the functionality offered by NaCl. In terms of actually turning down the platform features, we recently announced a timeline at https://blog.chromium.org/2020/01/moving-forward-from-chrome-apps.html. In terms of LLM, I would prefer to keep the support we have in the tree until

I am about one step away from heaven on earth. I think only one step! I am using dgc.genetics to run a TDT test on thousands of genetic loci. I have learnt (through the help of others on this mailing list) to send the complex output to useful data frames which in turn allow me to look at the big picture and screen the thousands of loci. Resultdt<-lapply(PGWide[,240:290], tdt) the above

Rers, I have been using the function 'by' in such a manner: by(LogMetric, list(Loci.Number=Loci.Number, Code.Flag=Code.Flag), plot) with par(mfrow=c(5,3)) to produce a single R Graphics: Device with 14 different plots on it as described above in my 'by' statement. Thank you for helping me thus far. A similar command using 'tapply' can be written as well. My

Hi all, We are using two methods to identify SNPs. One is based on resequencing the genome and aligning the reads to the sequenced genome to identify SNPs (data available for 44 individuals). Another is based on SNP array with selected loci (30000 loci, 870 individuals). I want to compare the results from the resequencing based minor allele frequency and Array based minor allele frequency.

Hi all, LLVM/Clang supports an OS called 'NaCl' (llvm/include/llvm/ADT/Triple.h). It apparently hasn't had any development since 2015. This page https://developer.chrome.com/native-client/migration mentions that NaCl is deprecated. Is it still used? If not, I would propose that we remove it. I created a patch https://reviews.llvm.org/D78441 which I think can delete 90% of the

# Hello, # I have a list with 6 categories and with different numbers of rows. # I would like to change each of them into a unique data frame in order to match # values with other data frames and perform some calculations. # Or I could make each category or list element have the same number of rows and create one large data.frame. # below is a creation of a sample list # I apologize for the

> From the provided documentation I understood that in memory data > structures of a PNaCl program are incompatible to the host program because > ABIs are different (e.g. PNaCl pointers are always 32-bit even when running > on x86_64 platform). > So PNaCl program can't access any data structures of the host program > directly. The only communication way is by using syscalls,

Am 19.06.2013 18:01, schrieb JF Bastien: > > From the provided documentation I understood that in memory data > structures of a PNaCl program are incompatible to the host program > because ABIs are different (e.g. PNaCl pointers are always 32-bit > even when running on x86_64 platform). > So PNaCl program can't access any data structures of the host >

> How will these bundles interact with ARM codegen? The constant island pass in particular. > Hi Jim, This is a great question. >From the compiler's point of view, these bundles indeed pose a problem for the constant island pass. At this point for the NaCl platform we disable this pass, generating instructions like movt instead (NaCl requires at least v7 for ARM). However, as a

Hi In my previous mail I mentioned the project on KCoFI( the control FLow integrity methods for commodity hardware http://sva.cs.illinois.edu/pubs/KCoFI-Oakland-2014.pdf ). Will it be more helpful to the community if I do the improvements number #1 and #3 mentioned in my previous mail to the mailing list or if i try to port it to arm architecture? I have decided to go ahead with the improvements

> I am trying to produce a heatmap of pairwise correlations, but since the matrix is > symmetric, I only need either the upper or the lower triangle. I have scoured the > web and R documentation, but I have not been able to find a way to produce such a > figure. Is there a simple way to produce a heat map with only the part above or > below the diagonal? You might want to check

Bottom Line Up Front: How does one reshape genetic data from long to wide? I currently have a lot of data. About 180 individuals (some probands/patients, some parents, rare siblings) and SNP data from 6000 loci on each. The standard formats seem to be something along the lines of Famid, pid, fatid, motid, affected, sex, locus1Allele1, locus1Allele2, locus2Allele1, locus2Allele2, etc In other

Hi all, BitstreamReader is the only in-tree client of the DataStreamer and MemoryObject interfaces. In practice when using user-facing LLVM tools, the bitcode will normally either be in memory or in a file, so the best way to access it is through memory, either directly or memory mapped. As part of some refactorings I am making to BitstreamReader, I would like to simplify it by changing it to

Hi everyone, I'm the developer of the Loci programming language ( http://loci-lang.org ), for which the compiler is a front-end for LLVM. I would like to say that LLVM has been extremely useful for the development of the compiler and so thank you everyone for building this amazing system. ---- Virtual Method Calls ---- While most aspects of the language map well onto LLVM IR, it seems

And on a separate thread [0] Derek indicated he'd be fine with removing it. I'll leave this thread open until end of Monday to receive any other opinions, then proceed to remove it. Peter [0] http://lists.llvm.org/pipermail/llvm-commits/Week-of-Mon-20161024/400754.html On Fri, Oct 28, 2016 at 10:08 AM, Peter Collingbourne <peter at pcc.me.uk> wrote: > Hi all, > >

Hello, I tried to align lines of text in the legend of a plot. It always defaults to the central alignment. How can I adjust it to be left alignment? Here is the code fragment written in python using Rpy module: text = 'Quantiles #Loci\n' text += '%s %6d\n' % (' 100',totalloci) text += '%s %6d\n' % (' 95',per95cntloci)