Displaying 20 results from an estimated 4000 matches similar to: "issue with graph package in using RBGL -‘'graph' is not a valid installed package’""
2009 Sep 21
1
Fedora 11: Package RBGL won't install
Hi
I've been trying to install RBGL and several other packages in gR task
view on Fedora11 64 bit without success
My guess is that it is due to boost (fedora is at boost 1.37 which is
a few minor versions behind 1.40) and very recent g++
Has anyone managed to install the gR task view or RBGL in particular?
Thanks
Cheers
Peter
========
[root at SPH-PH-428-04P ~]# gcc --version
gcc (GCC)
2008 Jun 27
1
RBGL not compiling on Debian Lenny with c++ (Debian 4.3.1-2) 4.3.1
I've just installed Debian Lenny and RBGL fails compilation with the
following errors (sessionInfo() follows).
* Installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
g++ -I/home/mkimpel/R_HOME/R-patched/R-build/lib64/R/include
-I/usr/local/include -IboostIncl -fpic -g -O2 -c bbc.cpp -o bbc.o
In file included from /usr/include/c++/4.3/ext/hash_set:64,
2013 Feb 22
1
Issues with installing RBGL package
Hi all,
I was installing a package *RBGL* of bioconductor. However, I had some
issues while installing it. I asked the devel group of bioconductor and
they told me to consult this group. Here is my conversation with the
bioconductor group related to the problem
*Me->*
I was trying to install the RBGL package using the following command
biocLite("RBGL")
However, I got the
2020 Oct 11
3
Installing bioconduction packages in connection with loading an R package
Dear all,
My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL.
To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R also installs packages from bioconductor.
Having to call setRepositories causes
2013 Feb 22
0
Issues with installing RBGL package
Hi all,
I was installing a package *RBGL* of bioconductor. However, I had some
issues while installing it. I asked the devel group of bioconductor and
they told me to consult this group. Here is my conversation with the
bioconductor group related to the problem
*Me->*
I was trying to install the RBGL package using the following command
biocLite("RBGL")
However, I got the
2008 Aug 07
1
problems with plotting of graphNEL (PR#11993)
Full_Name: Christian Kuehnert
Version: 2.7.1
OS: Windows XP
Submission from: (NULL) (91.14.237.109)
Hello,
I've installed the package RBGL (and XML and Rgraphviz) and tried to follow the
examples in the RBGL-manual
http://bioconductor.org/packages/2.2/bioc/vignettes/RBGL/inst/doc/RBGL.pdf
But when I try to plot the graph using e.g.
plot(dijk)
an error message occurs:
"Error in
2012 Nov 15
1
Function for extracting Lambda Sets
Dear All,
I would like to extract Lambda Sets from a binary matrix that
represents a social network.
The calculation of Lambda Sets is set out in Borgatti 1990 (which can
be downloaded freely).
The package SNA goes part of the way with the function MaxFlow but
does not have the Lambda partitioning - but perhaps it is called
differently in R.
Does anyone know if it exists as a function or if there
2008 Oct 06
0
RBGL installation
Hi
I'm trying to install the RBGL package. However I am getting the following error; can anybody shed some light on what I'm missing?
/usr/lib/gcc/i486-linux-gnu/4.1.2/../../../../include/c++/4.1.2/cstdlib:135: error: ‘::system’ has not been declared
Thanks.
Iain
> sessionInfo()
R version 2.7.2 (2008-08-25)
i486-pc-linux-gnu
locale:
2011 Feb 05
1
Performance of graph and igraph package
Dear R users,
I'm using graph library to create a mesh-like network topology and
implement a load balance routing algorithm. The current implementation
uses graph, RBGL, and Rgraphviz libraries. I have a few attributes on
every edge to represent the network loading and capacity, and I
frequently update these values. However, I found it works so slow and
right now I'm consider rewriting it
2009 Mar 06
2
Highly Connected Nodes in Igraph
Hello R Help Team,
I have created graph from weighted adjecency matrix .Is there a way I can
find highly connected nodes in Igraph like the Package RBGL does.
nathan
--
View this message in context: http://www.nabble.com/Highly-Connected-Nodes-in-Igraph-tp22377522p22377522.html
Sent from the R help mailing list archive at Nabble.com.
2011 Aug 16
1
Problems installing SJava
Hello, I am trying to install SJava but I haven't been able to complete it
successfully. I have tried to install it from bioconductor using the
followin code and got the following output:
> source("http://www.bioconductor.org/biocLite.R")
BioC_mirror = http://bioconductor.org
Change using chooseBioCmirror().
> biocLite("SJava")
Using R version 2.12.2, biocinstall
2007 May 13
2
Oddities upgrading from 2.4.1 to 2.5.0
I'm working on Windoze XP and have for some time installed R in D:\R and
upgraded my packages after installing the new version of R with a bit
of code I think I got from the list:
ip <- installed.packages(lib.loc = "d:\\R\\R-2.4.1\\library")
ip <- ip[ip[,1]!="base" ,1]
install.packages(ip)
This time around that's produced some warning grumbles:
Warning messages:
2009 Mar 19
1
Minimum cutsets
The minCut function in RBGL package returns only a value or the minimum cut. I would be
really greatful if any knows of any R function or package available for
finding all minimal cut sets ( i.e., components whose failure will
results in a network failure) between any given pair of vertices.
2008 Aug 14
0
RGBL not compiling with R-devel under Debian Lenny
Some time ago I had difficulty installing RBGL with Ubuntu Hardy on R-2.7.0
and the problem was attributed to an with BGL. I got some very helpful
advice and posted a script to fix the problem by hacking the RGBL source
code:
dateTue, Jan 15, 2008 at 2:16 PMsubjectRe: [R-sig-Debian] trouble installing
building packages from source using R 2.6.0 on Ubuntu Gutsy AMD64mailing
2006 Aug 31
1
problem with postscript output of R-devel on Windows
I have developed a problem with the postscript output of plot on Windows. My code still works properly with R 2.3 but, with R 2.4, the white text on red background does not show up. It does, however, show up when output is sent to the screen. Below is my code and sessionInfo.
R version 2.4.0 Under development (unstable) (2006-08-29 r39012)
i386-pc-mingw32
locale:
LC_COLLATE=English_United
2010 Jul 08
2
package installation for Windows 7
Neither biocLite nor the GUI menus can install packages on my system.
Here is relevant output:
> version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
major 2
minor 11.1
year 2010
month 05
day 31
svn rev 52157
language R
version.string R version 2.11.1 (2010-05-31)
> source("http://bioconductor.org/biocLite.R")
BioC_mirror =
2007 Mar 23
1
can't load just saved R object "ReadItem: unknown type 65"
I have run into a problem loading a just saved R object using R-devel. I
have been saving and loading this particular type of R object for a long
while and never ran into this problem. I save, then immediately reload
(to test save) and get "ReadItem: unnknown type 65".
This error is reproducible after logout from server and restart of emacs
and R.
Below is my output and
2007 Mar 23
1
can't load just saved R object "ReadItem: unknown type 65"
I have run into a problem loading a just saved R object using R-devel. I
have been saving and loading this particular type of R object for a long
while and never ran into this problem. I save, then immediately reload
(to test save) and get "ReadItem: unnknown type 65".
This error is reproducible after logout from server and restart of emacs
and R.
Below is my output and
2006 Aug 11
1
[BioC] problem loading affycoretools (more details)
Hi again,
I have been playing around with the order of loading packages, and as far
as I can tell, there's nothing specific with affycoretools that's causing
my Rgui to crash (i.e., shuts down and the Microsoft 'please send error
report' box pops up). Instead, it has something to do with the order & type
of packages that are loaded that add items to the menu bar by
2007 Jul 30
0
install error for RBGL_1.12.0 on linux
Dear all,
I meet error when installing the newest Bioconductor packages 2.0 for R
2.5.1.
the enviroments are as bellow:
> sessionInfo()
R version 2.5.1 (2007-06-27)
i686-pc-linux-gnu
locale: