similar to: Error in AnnotationDbi package - makeProbePackage

Hi all, I wrote a function that actually does what I want it to do, but it tends to be very slow for large amount of data. On my computer it takes 5.37 seconds for 16000 data points and 21.95 seconds for 32000 data points. As my real data consists of 18000000 data points it would take ages to use the function as it is now. Could someone help me to speed up the calculation? Thank you, Tonja

The following seems weird: > format("\pm2") [1] "pm2" > format("\\pm2") [1] "\\\\pm2" > i.e. it seems impossible to set up a x so that "format(x)" returns "\\pm2", and in turn "cat(format(x))" prints "\pm2". ("\pm" is latex for "plus/minus"). R is version 0.64 for win95. I want to

Hi All, I tried to install AnnotationDBI like so: source("http://bioconductor.org/biocLite.R") biocLite("AnnotationDbi") and got this error: .... Loading required package: RSQLite Error in dyn.load(file, ...) : unable to load shared library '/RHEL3/local/lib64/R/library/ RSQLite/libs/RSQLite.so': /RHEL3/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined

Hello, has anyone experiences with the Apple mail client, to be precise : Mail 5.2? When I copy a message with an attachment from the inbox to a different folder using 'move' or 'copy' , Apple Mail does not properly display the attachment in the new folder. When I copy the same message using 'archive' the attachment shows up properly. There is no difference on the

Hi, I'd like to use the font "Frutiger" in my pdf files generated by R. but I only manage this if I create a postscript file with postscript() and the option family = c( "LT_14361.afm", "LT_14363.afm", "LT_14373.afm", "LT_14375.afm" ) and convert this postscript file to pdf. If I specify the option 'family' like above ( =

Hello, I've downloaded the metadata plugin from http://hg.intevation.org/kolab/dovecot-metadata-plugin compiled it without errors, made the entries as described in README in dovecot.conf. Only ANNOTATEMORE or anything else additional doesn't show up in the capabilties. Is there anything wrong with my configuration? What I see is: telnet localhost 143 Trying 127.0.0.1... Connected to

Thank you very much for your reply. Your code work well with this example. I modified a little to fit my real data, I got an error massage. Error in split.default(x = seq_len(nrow(x)), f = f, drop = drop, ...) : Group length is 0 but data length > 0 On Thu, Jan 31, 2013 at 12:21 PM, arun kirshna [via R] < ml-node+s789695n4657196h87@n4.nabble.com> wrote: > Hi, > Try this: >

Hi, I'd like to position our corporate logo (gif) beneath a graph. Is there a function to position images? Thanks, Helga Neidlinger-- Helga Neidlinger Zentrales Knochenmarkspender-Register Assistenz Gesch??ftsf??hrung fuer die Bundesrepublik Deutschland ZKRD gGmbH, Postfach 4244, 89032 Ulm Tel.: (0731) 1507-12

Hello, Im trying to combine 3 affybatches (1x hgu133+2 array and 2x hgu133a array) Im useing this script: library(matchprobes) library(affy) library(AnnotationDbi) library(hgu133plus2probe) library(hgu133aprobe) library(hgu133a.db) u133p2 = ReadAffy() # reading hgu133 +2 cel file into affybatch u133a1 = ReadAffy() # reading hgu133a cel file into affybatch u133a2 = ReadAffy() # reading hgu133a

I would like to build a package for the HT HG-U133+ PM arrays from affy, but I can't find any good documentation on how to go about it. Naively using makecdfenv's make.cdf.package() causes R to seg-fault. I'm unfamiliar with the CDF format as such, but I'm guessing that it's changed somewhat because the PM arrays no longer have P/A and mismatches. I'm looking to build

Hi @ All, I have installed Corel Draw on Ubuntu 7.10 with Wine 0.9.4.6. I used this installation guide http://appdb.winehq.org/appview.php?iVersionId=1840&iTestingId=6822 That meand I copied the to dll-files to home/.wine/win32 The Installation was successfull. No Errors. Than configured Wine and used the DLL Overridingtool to make "wintab32" & "msvcirt and native like

Hi! I ran into a problem using a USB device and was wondering if you could help me. I'm running a Win XP SP3 in a VM with libvirt on a Xubuntu 11.10. I configured it to talk to several USB devices. With one particular device (a Phonak Compilot[1], admittedly a probably rather unusual device), the VM dies with the following error in the libvirtd.log: 2012-07-20 21:04:19.591+0000: 1282:

Hey everyone, I have a series of thumbnails that have a loading overlay placed over them when they''re clicked on. The overlay is set to an opacity of .7.. .The onclick code looks basically does this: var loading = document.createElement(''div''); loading.id = ''loading_image''; $(loading).addClassName(''thumb_loading'');

Hallo, I just installed all needed packages for my project on my PC. But I cannot load all at one time. I now want to load limma. How can I realize the following plan: I want to install for example limma inclusive all needed other sub packages (add-on). Can anyone tell me the corresponding command? Thanks, Corinna Here is the result of the command library(): Pakete in Library

Pete Batard <pete at akeo.ie> wrote: > On 2013.08.09 16:24, Bernd Blaauw wrote: > >> Sorry. If you are substituting any files you should substitute them all. > > > From where I stand, the idea that someone using an ISO will only ever > use it in optical media mode (either real or emulated) is a thing of > the past. > > These days, you can be almost certain

H. Peter Anvin schreef op 9-8-2013 7:37: > Sorry. If you are substituting any files you should substitute them all. I assume it's not possible to store a copy of the LDLINUX.SYS binary at the end or inside of either ISOLINUX.BIN or LDLINUX.C32 then? Then at least it could be extracted, for those distributions not having LDLINUX.SYS / SYSLINUX(64).EXE present on their CD. Having

I've Problems to compile openssh 3.9.pm1 on AIX 5.2 with openssl-devel-0.9.6m-1 On Configure I've the following Error: ./configure --with-ssl-dir=/usr/local/ssl/include/openssl/ --sysconfdir=/etc/ssh --with-zlib=/usr/local checking OpenSSL header version... not found configure: error: OpenSSL version header not found. ./contrib/findssl.sh Searching for OpenSSL header files. 0x009060dfL

Hi All, I tried to install AnnotationDBI like so: source("http://bioconductor.org/biocLite.R") biocLite("AnnotationDbi") and got this error: .... Loading required package: RSQLite Error in dyn.load(file, ...) : unable to load shared library '/RHEL3/local/lib64/R/library/ RSQLite/libs/RSQLite.so': /RHEL3/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined

My conception of how NAMESPACE and methods in R-2.7.0 resolved a generic 'func' to a func-method was to search as follows: In 2.7.0: func --> NAMESPACE, including Imports: (and other details) --> .GlobalEnv, and eventually Depends: since these are on search() In R-devel it seems like func --> NAMESPACE, including Imports: (and other details) --> ?? but not

Full_Name: Allan McRae Version: 1.6.0 OS: Win 2000 P Submission from: (NULL) (129.215.190.229) When using predict.Arima in library ts(), it appears differencing is only accounted for in the first step of prediction and so any trend is not apparent in the predictions. The example shows the difference between the predictions of an arima(1,1,1) model and the backtransformed predictions of an